MmuINT0096316 @ mm9
Intron Retention
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:48476994-48482248:-
Coord C1 exon
chrX:48482098-48482248
Coord A exon
chrX:48477089-48482097
Coord C2 exon
chrX:48476994-48477088
Length
5009 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCATGATTTCCTACTGCAAGTGC
3' ss Score
1.5
Exon sequences
Seq C1 exon
GCCCTGCCGCATGGTGCACTTCAACTGATACCAAAGAGGTCAGCCCTTGACAAGGCCAATGGTGCCACTCCAGTCTTTAACCCCAGTGTTTTCCACTGCCAACAGGCTCTGGCTAACATGCAGATTCCTCAGCAGGCTTTTATCCCAACAG
Seq A exon
GTGAGAACAGAGCTGGGGAAATATTGGGTTGAACAGTTTGAGTGGGTATTCCGTAAAGCCCCTTCCAAGGGGCTTTGTTGGGGGACTATCACCATGCATTTTGACTATAAGTAAAGTAAAGCTATTGTGTTTGACTTGATATTATCTAGAGTAACATGATTTTGGAGATGAATGGCTTGAAATCAGTGGGAGAAAGATGTTAATAGTTTACTTTTTGGCATTGCTTTTTACTTTGGGCTTCTGAAAGTTGATTCACTTGGTCTAGTCAGCTAATGTCTTGACTCTCAGTGATTATTTCATAGATAGTAATTATCTGTCAAAAGAATTTTCCGCCTTCAATATTGTAAATTTTGTAGTCCATATAACTATGATATAACAGTCAGTAATTTTTAAACCCTCGTGTTTATAGTAAATTTGTGGTCTATATATAAAACAGGTAGTTTCAGCCTCTGACTCTTGCAAACTACTATTAAGTGAAAGTAAGGAATGGGGGATGGGTGGAGTAATGGAGAACTTGTCTAGCATGCTCAAAGTCTTGGATTTAATCTCTACTACTACAGAAAGTTGTGGGATTTTTCTCTTTAAAAAAGCTGTAATAAATAAAGGTACCATTTGCTTTAAAACCATTTGCTTGTAAGGCTTGTAGATTACATAAACATGCTTGATACAAAGCATTGTATACTTAGACATAGGGAAAAAATGAATTGATCAGTCAGTTAATTTTGAAGGGAGCCATTAAAAGTAACTGTTTAGTTATTGACTACAGTCACTCATCAGGTCACCATTTACAAGGCAGACACGATACATTTATATAATAGTTTCTGGAGACGAAAAATGGAGTTCTTTGACATATTTCTATCACTTAGAATGACAATTCATGTCTAATGATGTAGATTTTTCTTCCAAATCTAAAGAAAAATATATAATGCCACAAAGTAAAAGAGAAAACCCATATGGTTTGAAGTAGCTTTTCCTCTCTTCAACAGTCACAGCAATTTCCACCTACATCACATCACTTCATCTGGGCTACTTTTCAGTTTTTCTCATAACTATAGAATAAGTTTGGTGTCCCAGAAGGTCCGGCCAGGAATGGTTGAATGTGGAAAAATTTACACTGTTCATTCCAGGATTTCTTTTCAAGTTTAGAGTGACTGTATGTAGAAGTTAGAAATTTGTTTTGCCAAATTTGACACATATAAAACCTAGTTTTAATTGGGCAAGGTGGTACATGCTCATAATCTCAACACTCAAGAAGCTGACTCAATTTTTTAAGTATAGGCCCAGCTTGGACTAGCTAAATAGCAGATGTGAGGCCATCCTCAAATTCACTGTCTTCAAACTAAAGTTATATACATACACACATATACATATACATATACATATATATATATATATATGTACAAGAAACCTCCCAAATCCTCTCCCCTGAATTCATAGCAAACCTTAAAGCTAATTTAGCTGAGACTCCCCCTTAATGGAAAGCCAGTTGTCAAATAGACTACTCCTCAGTTTCAATGAGGTGTGGGACACATTTTTTTTAAGAAATAGTCTTAATGCATTTTATTATATGATGAATAAATTTTCTCTTTTGCACTATGTTTGGCACAATAACTGATTTATTTTTTAAATTTAATTTTATTTTTAATTTATTTTTTACACTCCATATTCCATTTCCCCCATCCACCCTCTGACTGCTCCACATCCCACACCTCCTCCCCACCCCACCTGGTCTCCACATGGATGCCTCCACACCCCACCTCATCTGACCTCTAAACTCCCTGGGACCACCAGTCTCTTGAGGGTTAGGTGCATCATCTCTGAATGAACACAGACCGGGCAGTCCTCTACTGTATGTGTGTTTGGGGCCTCATAGCACCTGATGTATGCTCCCTGTTTGGTGGTCCAGTGTTTGAGAGATCTCAGAGGTCCAGATTAATTGAGACTGCTGGTCCTCCTGCAGGATCCCCCTTCTCCTCAGCTTTTTCCAGCCTCCCCTAATTCAACAACAGGGGTCAGCTGCCTCTGTCCATTGGTTGGGTGCAAATATCTGCATCTGACTCTTTCAGCTGCTTGTTGGGTCTTTCTGAGGGCAGTCATGATAGGTTCCTTTTTGTGAGCTCTCCATAGCCTCAGTAATAGTGTCAGGCCTTGAGACCTCCCCTTGAGCTGGATCCCACTTTGGGCCTGTCACTTGAACTTCTTTTCCTCGGGCTCCTCTCCATTTCCATTCCTGCAGGTTTTTCAGACAGGAACAATTATGGGTCAGAGGTGTGACTGTGATATGGCAACCTCATCCCTCACTTGATGTCCTGTTTTTCTGCTGGAGGTGGGCTCTCTAAGTTCCCTCTTCCCCACTCTAGAGCAATTCTCTAACAACAACAGCAACAACAACAACAAAGGCAACAGACTTGGATCCTGGAGCATACCTTTAAGGGGATGTGTGTAGTAAACAAATAGTCTTCTTTTATGAATAAAGTTTTGACAGTATATTTGCCTAGAATAAATATTTAAGTGAGGTTTTATTCCTTTAAAGAAAAAGTAAAGTTCTTTTTTAACCTCTGAATTACTTATACTACCTGGGTCTGTGGTCTTAAACCTAACCTATAATTATAAGCATGGGCAATTACTGTTTTGCATGTGCTGTTGAATTGATATTGCAAAAAAATTACCTTTTGAGTTAAAATGCACTTCTCTCTCTAAGGCCTTAACGATGAATCTCTCTTTTCTTTACTTTCCACGCTTTTCTGCATGGCGTGCAGGGCAAATACTGTGCATGACTCCTACTTCAACTTTTGGTAGGTTTTGTACAAAAAAACAAAAAAAAACTCACTTTCTGTAACCTAAAACCATCTTTCTGCTCAGACTATGAAAACACGGGTGACAAGATGATGTGAGTGAGTGGACATGTTTGAGGGCTTAAGCTTTAACATGTGCAATTAAAGGAGACCCATTTCTCAGGGCTTAGCAGGCTGTCACTGTAGCCAAATTCTAATCCTGCCATGTCATTTCTTTCCTAAAAGTAGCAAGTAAAATATTTTTAAAATATTCCATACTGATACTAGATGATTTTTTGGCCTTCTGTCTATTATTTTAAAAATAAATTTCTAATGTATAATTTATAAACTACAATAAAACAATCTCCTCCCAAAGTTATCCCTATAATGCAATGCATTCGTTCCACAGATGTTGAGAATGGCTGACTTGAGCAAAGCTAGACCATCCTGCAGTGTTCTGTGACACATTCTATAGCAGTCAAGGATGAAGCATCATGTGCCCAGAAATTTGGCACAACCAAACCATTTCAAAAGTGATTTGGGGTTCATTGTGCCATTTGAAACTATCAGTCACATCCTCTCAGCCTTTTGGCTAGCATCAAGTGAAAAATCAGTTACACAGGAATTCTGTAGTTAGCCATCACCACAGTTTGTAGCCTCCCGTAAGCCATTTTGTATTTCGCTGATAGAAAAGAAAATGAGAAAGCCGTTGGGGAGGTCATAGTTCCTAGGAACCAGGAATAGATCATGAGAAATTAATTTTTTAAAGTAGGATTCATAGCCCATCTTAGCATCTCCTAAGAACCCAGTTGCTCTCATTTTAGAGAAGTCACAACAGCTTGATTTCCACCTCGCTGGTGGACTAAAGATTATGGGGTCATCGAAATAAGGAAAGTTCAAACTAATGACCGCATAGAAGTAACACAAACACAGTAAGCTGTAAACCCTGGCAAAGGGTTGAGGCCTGTTACTGAAGGATTAGCTGTTCCCCGGAGGAAGTAACATCACCTTGATGCTAACATTCTGTGCATGTAAGGGGAAGAACTGACGTCTGCAGGTTTGAGAACTGTGTCTATTTTCACATTTTGTGACCTGTCTCTTGGGGCCGCTTCCTTGTCCTTTCCCTTTCTTTCAAAGCTCTGCTTCTGAATGCAATTGCACGCTTTGGCACTGCGCCTTTCCGCACAGTTGCTGTACGTCCAACGAGAAAAACATGAGTGCTTTGAGAACTCGCATGCAAGACGAGGCAAGATGGCTGTAGGCAATAAGTAAGCAGACATGGGTAAAGGGGACACCTAAGGAGTTGCTCTTACTATTCGGAGGACATTCACTTTGTTCCCCAAATTTTGGGAGTTCACTTTGTCAGCACACTGTCAGAAACTCCGAATTTGACTGAGGTAGACACCGCAAGTCATCATAGGTGTATGCTTCCCATTCACACACCAAAATAAGCTGGAAATTCCAAAAATATCCAAAGGCTTTGAAAATGAAATTAGAAAAGCAAAGAGAAACACTCAGAAAGACATTTTGCAGCCACTAGCCATTGTAGGTCTAATATTTGCTGCAAAGACAAGATTTACTACAAAGCACTTATATATTTGAAAATAGTTAAAATTTCCAAGGAACTTACAAAACTGAATGCATATTCTATTGCTTTCTTTCATCACACCTGCTCTTCTACCACATACATCAACAGACCCACTGTTCTTTTATATGCAGACCAGGTAAGTACACAGAAAGCTGTCATTTGTACAAGAAAATTGAGTTACAGAACGTGTCAGTGAACCCAAACACCAGTCAACAATTCTGTAATTCATTTTGACTGTGCAACCCAGTGACTTGTCTGCTTTAACTAGCTTTAATAGATAGCCCTGGTAACAGCAAACAGCATATATATATATATATATATATATATACCTTCATTCATTCCTGAAAGTTCAGCCCTTTGAATCCAGTACAATGTTATTTTGCTCGAACTGTTAAGAGTGGCTCTGTTTCATTAACGATGACTATAATTGGCTTTCCCCTTTTCTCTTTTTGAAATTTTCCTCCATTCTGTGCCGTGCTGCTTTGCACTGACTCTGGTTGCATGCTGCACCCTGGTGTGTACCCATCATGATGATGTCACGTGGCTTGTTGCTGGAATATCTACTACACCCCATTCCATCGTCTCTGTCATGGTTGTGTAAATGCTTCACCCTTCCATGTGTCGCTTCCATGATTTCCTACTGCAAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-Mbnl3:NM_134163:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.789 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: