HsaINT1022626 @ hg38
Intron Retention
Gene
ENSG00000076770 | MBNL3
Description
muscleblind like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:132384663-132386706:-
Coord C1 exon
chrX:132386661-132386706
Coord A exon
chrX:132384699-132386660
Coord C2 exon
chrX:132384663-132384698
Length
1962 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTTCTGCGTGGTGTACAGGGC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GCTCTGACTAACCTGCAGCTCCCACAGCCGGCATTTATCCCTGCAG
Seq A exon
GTGAGAACACAGCTCTAGGCACTGCAGCGAGTTTGGTGATGTTGTGAATGTATACAATGCAAAACAGCTTTCAAAGAGCTTGTATAGGAGGACTGTCGACATGTATTTTGATTAAAAATAAAACAAGGAAGTTATGCTTATCTGCTAGTATCTAGAACTACTTGTTTTTCTATAATTCATGAAAATTCATGGTTTGAAATCAAACTAGGAAAAAGTATCAACATTTTTCTTTTTAGCATTTGTTGGTTTTTGCTTATGATTAATTCACTTGGTTCAGTCTCAAACTAATTCCTTGACTCTTAGGTATCACTGTCACAGACAGTAGAGTGCTGTCAAATAAAAAGGCAAAAACTCCCAGCTTCGATATTATGGAAATGCGTTGTCAATATGTCTTTGATATGCCAAAGGTAGTTAAAATAAAACTACCCTAAGTGCATAATATAGTATAATATAGATTAAACAGATAGTTTTAGCCTGTAACTCCTGAATCAGTTAATATAAAATACATAGCAGTTTATATTTTCTGACATTTTGCAGCATATTTTGTTATCTCCTACATTCAGCTATATTTAATAGCCTGTTTTACATGAAATTGAACAGAAAATGTTAAGCCAGAAATTTGTTCAATTAGATATCATATATTGGGGGGAAACTAATTTTCTTCCAGTGGTTTAGTAGTTTAAGAATGAGCATATAGTCTCTTAGGAATAAATTGAAAATTCTAACCATTGAGAGTACAGCAGTTTTTTTTTTCCATTTTTTTTTTTTTTTGACACAATGGTAAATGCCCAAGATTGGAAACTATTTTTAAATGAAAATAACATATGTTTTAAAAAATAATTTAGAAATCCTTGTTAATACCCAGACTTGAGAAAACTTATTGGTTAACTAGTAAATTAATCAGTTAATTAATTTTGAAAGGTACCATAAAACACCAGTCTTTAGTTACTAGCCACAGCAGTCCTTCATGCCATCATTTAAATTATACAATTTGTATACATTTATATGATAGTTTCTGAGAGGAAATATGGAATTCTTCAGCACTTTCTTACATCCCTTATAATAAGTAACTACTGATATCTAATAATTTAGATATTTTCTCCCAACCTAAGAAAAACACACATAATGTCTACAGAGTAAAAGAGAAAACCAGTATGAGTTGACATGACTTTATTCCTAGCATTTTTTTTCTTCAAAAATTGTGGTAATTTACCTACACATTAGATCACTCTACCTTGGCTACTTCCAATTTGTATTATAGCTGTGGAATGAATTCAGTAGCCCTGGAAGTCTAGTCAAGGTGGTTGAATATAATAAAATGTATGCTGTTCATCATAGTTTTTCTTAATACTACAGTTACTTTGTTTCCAAGTTTGAATTTTTTGCCAGATTTGGCCAACATAAAATCTAGTTTCATAAGCAAAAATGTCAGAAAAATTCCCTTTCCCTTAATTAGTAGCAACATAAAAGCCTGTCCAGCTAAGAGGTCTCTCTTAATGGAACCTCTTTGCCATATATTCATAGTCAAGTCCTATTGACTATGAGACAGTGGAGGAGACAGTGTTAACAGATTAATACTCTAAATAGAAACACGGACACCAGATACGAGATTCTGGAGCATATTTAGAAAATGATATGTGTAATAAATTAAAATTCTCTTATTATAAAAATTATTTAGGATGTATTTGTCCACAATAAATATGTAATTTAAGTGAGTTAATTCTTTTAAAGAAAAATTATAGCTGATTTTGTACCTAAGAATCCAAGAATTATTTTGATTACCTGGGTTTGTGACCTTAAAACTAATCTGTAATTGTAAACATGGGAGATTGTTGGACTTGCATGTGCTGAGTAATTGATATTGCAAAGAAATAATCTTTCTGTTAAAATGTATTTCTATCAGTAAATCCTTAATAATCAAATATCTCTTTTACTTTCCACGCTTTTCTGCGTGGTGTACAG
Seq C2 exon
GGCCAATACTGTGCATGGCACCCGCTTCAAATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076770:ENST00000370839:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.582 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains