Special

GgaINT1031165 @ galGal4

Intron Retention

Gene
NA
Description
NA
Coordinates
chr4:3482315-3484691:-
Coord C1 exon
chr4:3484541-3484691
Coord A exon
chr4:3482351-3484540
Coord C2 exon
chr4:3482315-3482350
Length
2190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTTCAATGCATGGTGCGCAGGGT
3' ss Score
3.7
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq A exon
GTAAGTGTCTCCTTGCTTTCTCCATCGTGGTTTTCTTTGTATGACCTAGACTCTGAGCTAATAAGCAGATCTGTAAGAGTCCTTAGCAAAAGAATATTAGTGTATAAAGTTTCGTGTTAAAAATCGATGGAATGTTAATGTATGTTGTTTGACTGTTTTTTCCTTCACCTAATGCAATCCAGAGCTTTTCACTTGTAAAGAGCCCTTCTTAGCCTTTCCTTTTTTTTTTTTTAAGCAGTCCAACTAAGAAAACTGTCTGCATGTTTCTTGAATTCATACTTGCTGTTTTTCCTTCTTATGGTTCAACTGGATAATCCCAAATTAATTCTTTGACTCTTGTGTAGCTATATTAAAGACTCATGTTAAAATATCTGGTGGGCCTGTATTTAGAGCTGCCTGCTCACTTCAAGCTGCAGGTTTCTTCTAACCTTCTATCTCAGTGACCTACATATTCCAGCAGCCGTTATGTTTGCAGAGGGAATGGCTCATCTTCAGTAAATACAAATTACGTAATTGCCTTTAAAGGGGCATATTTTTCCCTCTTGCTTGTCTTTTGACCAGTATGATAGCCTAAGATTTTTAAAAGCAATTTAACTCCCAGCTTTTATTGTACCTTTAAGGTCTCAGAGTAAAATTGAAAGATGCAGCTCAGTAATTCATATAGAAATCGAAACATTGACGTGGCAGATGTGACTGCTGCCTCGCCAATTAACCTCTGTTCGCTGCAGCCAAATGGAAAACAAAACCTGCTTAGAGTAGTAAGTACTGCAGGTGGCTGAATTGGGAACGTTTCAGAGTTGGTAGCCTCGTTTTAGCATCATTGTTTTCATTGCAGGGCATTATATGGAAACAAATGCCTGACATTTTTAACATTTAATGCTGTATTCTTTCGCCAACTGATATTTATAAAAATATACAGAGCCTTTCCGTGGGCTGTCTGCACAGTAAACATGCAGTAGACCTGGACCTTGGCAATTTCAGTCTTTGGAGTCAGGGGAAAAGCTTTAAGAGAGCCTAGTATTGAGGCTAAACTGTGTCTCAGCTGTGAACATGGTCCAGAGAGTCGAGACCTACATGTTGTATTCTCCTGGTCTTTGTGAGACCATTGGAGATGCTCAGAATTCAGCAGTTGCCAGGATGTTTTCCCAGGGAAGGAGTGTCTTATATGGAGAGATGAAGGGACCAAGTAGGAGTCCTGTGGTCTGCAAAGTGCTTTTGGAGGCTGAGCTGACATAAAGATACATATTTCTGATGCAAGCACTGTAAATTAGCTTTCACCCAGAACTCTCATGCTGCTGTTGTGCACTGTCTCTCGGCGATGGGATTACGCACAGGCTGATGCATAACAGATCAATTTGCTGACACTGGCTCTTGTCTGAGGACATTAATGCTTATCAGAGAAGTAAATTTCCAGTCAGAGAATGAATCGCCGATGAGTTTACACATCCACGTGTTCCCTTACTCATGCATCAGGCTGCAAATTTGATCTAAGCCATTGCAGTGCTCTTGGTAGCAGAGCAGAGAAGTGGCATGCAGCAGCTCACACCCTTTTGAGTGGTCGACTTACTTTTGTTAGTGTCTCCTATTCAGTCCTTGAAGTGTCAGTTATCCCTCTATGATAAACCGTGGTCTCTCAGCATCATGGTTTGCCATGGAGGTGGGGGGATCAGAGCGAACACTGAGAATGATGTCATCACTGCAGCTGTTTCAAGTCTAAAGAAACTGCCTCTTTCAGCTTTAAACTAGAGACTTTGAATCCCAAATCCCTGCTTCCAGGAGTAAATTGTTTTTAGAAAGTTGGTTTTAACATGAGTGTGATGTTCCTATAAGGCAATCTTGTCTGCTTCCGTGATTGGAAAGAAATCAATACACCTGATACTAAAAAAAAAACCACATCATTAAGCACCCTGATTTGTAGAGTAGATCACATCATTTAATACCAGGGTGGAAGAAGAAATAGATTTTCTACTACCCAAGAATGCAAGAATTAATTTGTTTTGCTACTGTCTCTTAAAACAGAGTTTAAACTATTTATGTATCAATATGCAGAATCTGTTTTGCATGTGCTTAAATACTGAATGCTGCAGAGAGAATACCTGCTTTTTAGTTAAAGTGATTTCTAACACTGGAGCTTCACTAATGAAATATCCCTTTTGTTCATCTTTCCACGCTTCAATGCATGGTGCGCAG
Seq C2 exon
GGTCAGTTCTGTGCATGACACCCACTGCAAGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157:ENSGALT00000045882:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (disopred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]