HsaINT0100460 @ hg19
Intron Retention
Gene
ENSG00000076770 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:20564]
Coordinates
chrX:131516206-131520839:-
Coord C1 exon
chrX:131520689-131520839
Coord A exon
chrX:131516301-131520688
Coord C2 exon
chrX:131516206-131516300
Length
4388 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTATGGTTTTCAACTGAAAGTGC
3' ss Score
0.98
Exon sequences
Seq C1 exon
GCCCTGCAGCCTGGTACACTGCAACTGATACCAAAGAGATCAGCACTGGAAAAGCCCAATGGTGCCACCCCGGTCTTTAATCCCACTGTTTTCCACTGCCAACAGGCTCTGACTAACCTGCAGCTCCCACAGCCGGCATTTATCCCTGCAG
Seq A exon
GTGAGAACACAGCTCTAGGCACTGCAGCGAGTTTGGTGATGTTGTGAATGTATACAATGCAAAACAGCTTTCAAAGAGCTTGTATAGGAGGACTGTCGACATGTATTTTGATTAAAAATAAAACAAGGAAGTTATGCTTATCTGCTAGTATCTAGAACTACTTGTTTTTCTATAATTCATGAAAATTCATGGTTTGAAATCAAACTAGGAAAAAGTATCAACATTTTTCTTTTTAGCATTTGTTGGTTTTTGCTTATGATTAATTCACTTGGTTCAGTCTCAAACTAATTCCTTGACTCTTAGGTATCACTGTCACAGACAGTAGAGTGCTGTCAAATAAAAAGGCAAAAACTCCCAGCTTCGATATTATGGAAATGCGTTGTCAATATGTCTTTGATATGCCAAAGGTAGTTAAAATAAAACTACCCTAAGTGCATAATATAGTATAATATAGATTAAACAGATAGTTTTAGCCTGTAACTCCTGAATCAGTTAATATAAAATACATAGCAGTTTATATTTTCTGACATTTTGCAGCATATTTTGTTATCTCCTACATTCAGCTATATTTAATAGCCTGTTTTACATGAAATTGAACAGAAAATGTTAAGCCAGAAATTTGTTCAATTAGATATCATATATTGGGGGGAAACTAATTTTCTTCCAGTGGTTTAGTAGTTTAAGAATGAGCATATAGTCTCTTAGGAATAAATTGAAAATTCTAACCATTGAGAGTACAGCAGTTTTTTTTTTCCATTTTTTTTTTTTTTTGACACAATGGTAAATGCCCAAGATTGGAAACTATTTTTAAATGAAAATAACATATGTTTTAAAAAATAATTTAGAAATCCTTGTTAATACCCAGACTTGAGAAAACTTATTGGTTAACTAGTAAATTAATCAGTTAATTAATTTTGAAAGGTACCATAAAACACCAGTCTTTAGTTACTAGCCACAGCAGTCCTTCATGCCATCATTTAAATTATACAATTTGTATACATTTATATGATAGTTTCTGAGAGGAAATATGGAATTCTTCAGCACTTTCTTACATCCCTTATAATAAGTAACTACTGATATCTAATAATTTAGATATTTTCTCCCAACCTAAGAAAAACACACATAATGTCTACAGAGTAAAAGAGAAAACCAGTATGAGTTGACATGACTTTATTCCTAGCATTTTTTTTCTTCAAAAATTGTGGTAATTTACCTACACATTAGATCACTCTACCTTGGCTACTTCCAATTTGTATTATAGCTGTGGAATGAATTCAGTAGCCCTGGAAGTCTAGTCAAGGTGGTTGAATATAATAAAATGTATGCTGTTCATCATAGTTTTTCTTAATACTACAGTTACTTTGTTTCCAAGTTTGAATTTTTTGCCAGATTTGGCCAACATAAAATCTAGTTTCATAAGCAAAAATGTCAGAAAAATTCCCTTTCCCTTAATTAGTAGCAACATAAAAGCCTGTCCAGCTAAGAGGTCTCTCTTAATGGAACCTCTTTGCCATATATTCATAGTCAAGTCCTATTGACTATGAGACAGTGGAGGAGACAGTGTTAACAGATTAATACTCTAAATAGAAACACGGACACCAGATACGAGATTCTGGAGCATATTTAGAAAATGATATGTGTAATAAATTAAAATTCTCTTATTATAAAAATTATTTAGGATGTATTTGTCCACAATAAATATGTAATTTAAGTGAGTTAATTCTTTTAAAGAAAAATTATAGCTGATTTTGTACCTAAGAATCCAAGAATTATTTTGATTACCTGGGTTTGTGACCTTAAAACTAATCTGTAATTGTAAACATGGGAGATTGTTGGACTTGCATGTGCTGAGTAATTGATATTGCAAAGAAATAATCTTTCTGTTAAAATGTATTTCTATCAGTAAATCCTTAATAATCAAATATCTCTTTTACTTTCCACGCTTTTCTGCGTGGTGTACAGGGCCAATACTGTGCATGGCACCCGCTTCAAATATTGGTAGGTTTTCTACAAAAATTATCAACATTTTCTAATCTGAAAAAATGTGTTTTTCTGTTGTGACTATGAAAGATGAATGACTGAAAGATGTGGCTGGAAATTTTCTGAGTATGTTAAGGTTTAACATGGTGCTTTCTGTTTTATGTCTTTGTAGCATCAAAATAGTCCTACTTTCTCAAGTCCTAGTTGGTTGCCACTGTGGCCAAATACTGGCCCTGTCATTTCTCTATTTCTACCCTAACAACAGCAACTGAAATATTAAAAAATCGTTTCTTTTACAATATTTGAAACTAGCCAGACTGGGCAGTTTTGTTCTTTGCTTAACATGTATTATTTAAAAATTGTAAAATACTTAAAATGTATAACTTGTAAAGTACAATGAAACAATTCCCACCTGAAAAAGTTATCTATAGGACTTAAAGCATTCAATGTTCCTATGTTGCGAGAGGATGAGTTCAGCAAAGCCAGAGGATTCTGCAGTGTTCTGTAATGAATCCTGTAGTGTTCTAGCCTGAAGCACCATTGGCACAGAAGCTAGGCACAACAGAATCATTTCAAAATGACTCTTTGAGTGTTACGTGATTTTTAACAAGCAGTTGCACACAGATCCTTTTGTTAGCCACTAACACAATATGATAGCCATCTCTAAACCATTTTATACAGCACTAATACTGAAGAGCATGAGAAAGGAATGGGGAGTTCACAGCTCCTACAGTCCTCATGGGCACAAGGAACAGACCAGGAGAAAATAGCTCTGTTCTATGCAAGGAGAAATGATCCCAACCCGTCCCACTCTACCGTCTCACATCAATCCAGGCCATCCCCTCCCTTTTGAGAGTTTGCAACAAATTGACCTTTGTCACCTTGGTGGACCAGAATAGATGCAGAGCCCCAAAAGCACTACTAACAGGCTTCTTGAGAATAAAGTTCAAAATGACAACCACATAGTAGCAGCACTCACTAACATAGCGAGATCTGAACCCTGGGAATGGAAGTGAGGCCCCTGTTACTGAGGGTTTGACTGTCTTCTGTAGGAATTAATAAACATTTCCATTAATACCAACAGGAGCACAATATGTATACCTTTGAATCATAATGTGTACAATTAGAACAGACTTCTGCAAGTTTGAGAAATGTGTCTTTGCCTTCATGTTTTGTGACAGTTTTCTTGAAGATGCTCTCTTGTCCTTTCACCTTCAGAGCTTTGCTTAGGAATGCAAACTGCATTCTTTAGTGGATCTGCTTCCTGTACAATTGCTGCACTCCCAAAGGGAAAACAAGAGTGTTTTTAGAATTGGCATATGAGACAACAGGGATGGCTCTGGGTAATGGGTAACTAGAGATAAATGGAAGGGATAACTATGGAGTTTCTGTTAATCACCATTTGGGGTACATTTTCAGTTTCTATGACATTGCACATGTTAATTTTTCTCTGGCCATTCATTTTCTCTTTAGACTTTCAGAAAATCTGAATTTAATTGATGTAGACATGATAAATTATTACATATGCATGCTTGCCATTCACACATTGCCATTCACACATTAATTCCCTGGTTTGCTTTCTGAAATGAGCTAGACATCAGAAAGCACCCAAAACGCTTTCTAAATGAGATAGAAACTAGAAAAGGCAAAGATAAAACATCCTGCAAGAGATTTCACAGCTGCTAACCATTGTAGCTATAATAGTTGCTGTGAAGACAAGATTTACTGTGAAGTACTCCATGTATTTGTTTGATAAATGGCCAAAGTTTCCCAGGAGTTTGCCAGAGGTGTACTTAAAAACCTGCATGCATAGTCCACTGTATTCTTCATATCTGCCCCCCTACCACATACCAACCAGTCTACCTACCATGTCTTTGCATGCAGATCAGGTAAGTATACATATAACTGCCTGTTTGCACCTGCAAATCTAGTGACGGCATTCATGTCCATAAGTCAGTGAACCTAAATTCCAATTTATGATTCCTTAATTCCATTTTGAATGTGCAGTCCAGTTACTTGTCTGCTTAACTAGCTTCAGATAGATAGCCCTTGTAACATTGGATTTTTGTTTTCATATGCATTCATTATAGCCCCTTCTGAAAATTTAGCCTTTTGAGTAAACTACAATGGGATTCTGCTCAAAAACTTACTAAATGTTGAGAATGGTTCCATTTTCCATATTGGTAACTATAATTGGCTTTCCCCTTTTCTCTTTTTAATTTTCCCCCCTTCCATGCTGTGTTGCTTTGCACTGACTGTGATTGCATGAACACCCTGATGTATTCATCGTTATGATGTCACATGGCTTGTTGCTGTGATACCTACCACACCTCATTCCATCGTAAATGTTATGGTTGCATAAATCCTCTACCCTCCCGTGTGTTGCTTCTATGGTTTTCAACTGAAAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACACCTACCACTGTGTCTGCAGCAACAACACCTGCCACCAGCGTTCCGTTCGCTGCACCAACTACAGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076770-MBNL3:NM_001170702:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=0.543 A=NA C2=0.764
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)