BtaINT0091485 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011556 | MED22
Description
Bos taurus mediator complex subunit 22 (MED22), mRNA. [Source:RefSeq mRNA;Acc:NM_001034742]
Coordinates
chr11:104305076-104308474:-
Coord C1 exon
chr11:104308266-104308474
Coord A exon
chr11:104305839-104308265
Coord C2 exon
chr11:104305076-104305838
Length
2427 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
GGTTTCTGGTGGTGGAAAAGCTC
3' ss Score
-1.94
Exon sequences
Seq C1 exon
GTCCGAGCCGGCGAGTCCCTGATGAAGCTGGTGTCTGACCTCAAGCAGTTTCTCATCCTCAACGACTTCCCATCGGTGAACGAGGCCATCGACCAGCGTAACCAGCAGCTGCGAGCCCTGCAGGAGGAGTGTGACCGGAAGCTCATCGCACTGCGGGACGAGGTTTCCATCGACCTGTACGAGCTGGAAGAGGAGTATTACTCGTCCAG
Seq A exon
GTACAAATAGGGCTGGACCCCTTGCACGGCGGACCTGCAGATCCTGGCCCGGCCAGCAGGAGTGCCCAGCCCCACCCGGCAGCCTCGTTTCCAAATCCTTCGTGGTCTCAGCAACAGAACCCTTTGTCTGGGTTTCACAGCAGACCTCAGGGTCAGAGCATCTGATCAACAGACAGCTGATGCTGCCTCCTGGGGCCCAGGCGTCAGAATGGAAATCAGAACCTCGAGGGTTGGAGGGCCAGGCCAGCGTTTCTGTCTGGGGGCGCGTCTGTCCGGAATAACCGTCTCATCCAGATCTGAATGTCCTAGCCGGGCGGGGCCAGCGCTCTTGGCTACCGGCCCCTGTCCAGGACCCCAGTGCTTGCCCAGGTTGTGACTCACCGTGGGTGACACCGTGGGCGTCACTGAACGCCCACGCTGTGTGTCTCGGGGTGGGGGTTCCTGGGAAGGACGGGGAGAAAATCCAAGCGGAGTGTGGCCTTGAACGCCAGGCCCGGGCACTCATACCACTGAGTTCTCATTCAGTTCAGCGTCACAGACCACAGCCCTCCTGCACGCTGGACCCAGCTACAGCAGTGGGCAAGGCCCGTGACACCAGCACTTGTGGCCTGCTTAGAATCCTGAAACCCAAGGCAGTTTGAGCTGGAGGGGCCCCAGGAATCAGAATCCAGGTGTAATTTACTCACAGGGAAGCTGAGGCTGGAGAGGCCCCCCACGTCCATCCTTGTTAGCTTGGAAAAATCAAGACTCAGTCCAGCGGACACTGGGTTGGCAGCCCCTCGCCCTCGCTGGACAAATGTGTCTTTCCCGTCATGGATTTTCATTGCTCCTTTCTGTCCGGTGGCGGCCAGGCTGGAGCCACAGAAGCCCAGAGCCAGCGTGTCTGTGGTCTGAGGCTGGATTTCTCTGTGTGCATTCCAGTGCCACCCCTCACGGTCCCTCCCACCTTTACCTCCGTGGGAAGGGACAAACGTTGCTGCCCAGTGGGAGTGGTTTAAACGCTTCCGGAGGGTTCTGGGGCCACCTCCATCCCTGATGCCTGTTGGCTCAGCAGGCATGGAGCAAGTGCCTCCTACGTACCAGCCTTCAGGGAGGGGTCCAGAGTGCTCCCTGGGGGCTTTCAGATCCTGCTGGGGACATGGCTCCTTATGGCCTTGTTTGTCCCCCTGTGGCCCCCATGGGCCCGGGCCATGGACTGAATGTCTGCAGGAGAGCAGCTTGGGCCTGCCTTTTGAGGCTGAGGGCAGAGAGGGCTGCAGGGGAATGCCTGAGAGCCAGGCTCCTCCTGTCCTGGCTCCGGGCCATCAGTCTGGCCCAGAGGGGTTTCTAGTCCAGCCTGGGGTCTTCGAGAGGCTGAGGCCCTCCATCTGTAAATGCCTGTGGTGGCCGGGGCTCAGCTGAGTCAGGGCCAGCCAGCTGTGGGCCCCTCTCTGCTTGTTCCCTACACAGGCGGCGTGTCCCGCCCCCCCCACCAAGCCACCGGCGCTCAGCCCGTTCTCCGTGTGTGTCCCCGCTGCCCACAGGCTCGCTCCCCCGCTTTCTGCTCACGATTTGCTCTTTCTCTCCCTCTCGCCTTCCACTCTCCTCGAAACTCTGCTCTGTGTCCAGGATGGTTCTGAGGCTGGATGCTGGGGGCGGGAGCAAGGGAGGGAGCTCGAGGCAGGACTCGGGAGGAAGCCAGCGAGACATGTGGGGAGGGGCAGGCCCCACTCGCCCCCTCAACGCCCTCCGCGAGCCATGCTCTGTCCACGTGCATCCTTGCTGAGAGGCCAGCCATGCTCTCCCCACACTGGACGAGATCTGGTGCGTTCAGTGTGGCGTGGCTGCAGATTGTCCCCGTGTTAGAGATGGGAGCCTGAATTCAAGGCGCTGGAGTCCTGTTTGAGGTCACACAGCTGGTGCAGGGCTGCAGGACAGAACGCCAGGGCCTCTGCTCCTAACCGCCACCCCATTCAAGCTGAGTCCCAGGCCCAGAGAGGAGACAGCATCTCTGTCCCCAGGGGCCTTGAGAAGCGCAGGGACTGTGGAGACCACTTCTAGATGCTGGTTCCTGCAACTGCAGAATGGAGCGTGTGTTCAGGCTGGCAGCTCCCTGCTAGAGGAAGGCAGCTGGAGCCAGGACAGGAGGGGGTGGCAGGAGGGACGCAGATGGGTCAGTGGAACGGACCTGCCGCGGTCACACAGCCTGCCAGTGGCTGGTCCCAAATGGGTCCCTGTGGAGCCCCTGGAGGGCCCAGAAGCAGGGGCCGCGCCCATGCCTCCCCCTCAGCCAAGCCTACTTGGTGGAGGGGCCCGCACACAGGGGAGGAGGGGAATGCAGGTCTGTGGTGTGCTCTGTGTTTCCTTAACTGCTTCTATCTTGCTTTCCTTCCCTGGCTTCATCTCTGCCTGCTCCTGTCTCTCCCTGGGTTTCTGGTGGTGGAAAAG
Seq C2 exon
CTCAAGTCTATGCGAAGCTAATGATCTGCCTCTGTGCGAAGCTTACTGGAGGCTGGACCCGGACACAGACTCCACTGACTGCCTCTCAGCCCCTCTGCTCGCGTCCCCGGAGCCCAGTGCTGGCGGCCCCCTGCAGGCTGCAGCCCCCACCCACTCCCACGCTGGTGGCCCTGGGCCCACGGAGCACGCCTGAGCCCCCCAGGGCTCCCCCACCCCCGGGCCCCGGGATCTTCGGAACGACATCCAGTTCTCACCCCAGGCTCAACTCCCTGCAGCCCTGGTTCCCACTTGGGGAGCCACTGTGGCTTCTTTGGGAACCTTGTCAGCCCAGGGACAGCCCACCTAGGAGTGCTGGGGGGAGGAGTGCCCCCACCATCCCAGGGTGGCCTATCCTTCCGATTTGCTACTTTCTGGGCTGGCCAGGAGGGTGTTTCCAGGAGAGTTTGTCCCGTTGAGGACCTAGCAGCAGGGCAGGAGGATGCCCAGTGTTGGGAAACCTGACCTGTGCATACTGTTTACCATGGGGGGAGGGGGAGGTGCTCAGAGTGGACAGTACTAGCCAAGGCCCAGCCTCCACGCACAGCTCTGCACACTACCTCATGCTGAGGCTCCTCTGATAGCTGACTGCCCCTGCAGGGCTGTGGGGAAAGGGGGCTGCCCACTCATGGAAGTCAGGCAGGGTCCTTCCTAATTCTGCTGCTGCATATGCTTGGTTGTTTTTGTAATAAGAGACTGTTGAATAAAACCACCTCTGCCCTTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011556:ENSBTAT00000015357:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.547
Domain overlap (PFAM):
C1:
PF146811=UPRTase=PD(47.4=77.1),PF061797=Med22=PD(52.1=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development