HsaINT0101575 @ hg38
Intron Retention
Gene
ENSG00000148297 | MED22
Description
mediator complex subunit 22 [Source:HGNC Symbol;Acc:HGNC:11477]
Coordinates
chr9:133338323-133344333:-
Coord C1 exon
chr9:133344125-133344333
Coord A exon
chr9:133341695-133344124
Coord C2 exon
chr9:133338323-133341694
Length
2430 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GGTTTCTGGTGGTGGAAAAGCTC
3' ss Score
-1.94
Exon sequences
Seq C1 exon
GTCCGAGCCGGCGAGTCCCTGATGAAGCTGGTGTCCGACCTCAAGCAGTTCCTGATCCTCAATGACTTCCCCTCCGTGAACGAGGCCATTGACCAGCGCAACCAGCAGCTGCGCACACTGCAGGAGGAGTGCGACCGGAAGCTCATCACGCTGCGAGACGAGATCTCCATTGACCTCTACGAGCTGGAGGAGGAGTATTACTCGTCCAG
Seq A exon
GTATAAATAGCGCTGGACTCCCCATGCAGAGCGGGAGCCTGCCTACCTGGGCCTGGCCAGCAGGCAGGGCTGCCTTCTGCTTTTTCAAATTCTTGCTGGTCTTAGCAGTGGAGCCATGCCTGGGTTTCAGAGCAGAGCTCCTGGCCAGAGCGTTTGACCGACAGACAATTCACATCCATATGCCAGGGCCCTGGGCCTTTCCCACAGTGCAATGTGATGAAAACCACAGGACTCACGCCAGTCGGATAGGCCGAGTCTGGAGAAGGGAGGCGCCTGGCTGTATCCCCCGCAGGCCCTCTTCCGAGAGCCTTCCTCCTCGGGCAGTGCGTTCTGGGGCTGTGCTGCTCCTGTTACCTTCTGAATCCATATGTAGAGATTTCAGCCAAGGCTGGGCCAGCCTTTTTTGGGCAGTCAGGTCCACACCTATGTCCAGGGCACCAGGGATGCAATTCCATGTGGATGTCACCAAACCCCAGTGTGGAGGCAGGGACAGTCATGGGAATGTGGGGGATGAAGCCCAGGCAGGGAATGGCCTTGAAAGCCATTGGAGCTCCAATTCGTGACCCACTCAGCCTTATCCACGGAGCTGGAGCCAACCTACGTGCCAGGCCCCGTGCTGGGTCCCAGGGATGCAGAAGGGTCAAAACCCATCATCCTGACCCTTGTGGGGCTCCGTAAGAAGCTGAAACCTTCGACCGTTTGAGCTGGAGGGGCCCTGAGAAATCAGAGTCTACGTATCATTTACTTAGGGGGAAACTTAGGCTGGAGACAGGGAGGCCTTCCACTCTGCCCCATTAGCTTAGAAAATCAAGATTCAGTCCAGCAGATGCAGAGTCCATGTCCATCTTGTGCCTTCTCCTGGACAAACCTTTCCTTCCTGGTGGTGGATTTAAAATACTCCTTTCTGCCCATTGGCCATGCTGGGAGCCACAGATATCCAGAGCCAGCATGACCTGGGGCTTGGTTTCCCTGCCCTGGGCTCAGTGGCACTGCTGAGCTGCAGCAGTCCTAGAGTTTTCCAGGGGGTTCTGAGGGAATCTTTGGTCCCCAGTACTCATTAACTCAGCAGACATGAGGCAGCATTTCCTCCACACTAGGGTGGCTGAGAGGGGTCCTGGGGTGTTTCAGACCCTTCTGGGCATCTCCTTCCACAGCTGTTCAGTTTGTCGGTCTCTTTGAGGCAGCCACCGTCCCTGAGGGCCCCTGCACAGAGCAGCTGTGGGCCTGTAATTCAGCCTGCCTGCCTTGCCTTGGGGCAGGGAGAGAGGGAACCTGCTCACGGCCCTGCAGCAGAGCAGGGCGCAAACCCAGGACATCTGTGCCAGGCTTCCCATGCCCTCCCCCAACAGTCCCTCAGCTTCACCCAGCGGGGCTTCCAGGCCAGCCTGTGTCCCCTCCCGCAGGCCTCCTGTCCACACCAGCGCCCCCTGGGGGGCCTCACACAGCCCCTGTGGCAGAAGCAGTTGCCCTCCTCTGTACATTGCCTTTAAGCGACCAGGTCCTGGCCGAGTTTCCTCTGCCCCTTCTTGCTGGTCCCCCAAAGGGCGCTCCGCTCCCTGCCCTGCCCTGCCCTGTTCCGCATGAGCTGCGCCTCTGTGCTCGCCTGCCCCCTCTCTGCTTGTTAGTTGCTCTTTCTGGCTCTGCCTCTCCTTTGCGTTCCTCGGGATGCCACTCTGTGCCCAGGACGGTTCTGAGACTGAACACTGAGGGCAGGAGCAAGGGAGGAAGCCAGGGGCGAGGCAGGCCGCGGGAAAGCCAGGGCCCCTGCCTGCAGGTTAGAAAGAGGCGAGCGTGGATTGTCACAGCTGCGGGCATGGGAAGGGCTAGCTGAGCTCTTCACCTGCATCCTGGCTGCCGTGAGGATTCCCCGTGTTAGAGGTGGGGACGCCTGCTGGAGGCCGCCTGGCTGATGTAGGGCTATCGGGAAGTGCCAGGGCCTGTGTTCCCAACTGTCGCCCCCTTCAGGCTAAGTCTCAGGCAGGGACAGACCCAGAAAGAACACAGTCTGCCCTCAGAGAGCTCTTTGCAGTGTAGTGACACTGGGGTTTCTGCAGTCAGGGAGGAGGGAGGGTGGCCAGGCTGACAGCTTTTTGCAAGAGGAGGGGGACCAGCACCAGCTGGGAGGCATAGGCTAGGACAGGCCCACGTGGAGGCTGGGCAGGAAGGGCCTGCTGAGGTCACACAGCTGTTGGTGGTTGGGCCAGGGCGGCTTCCTCCTTTCAGAATGCTAGGGTGGCTCTCACCACTGGCCGCCTCTCCTTGCCAGGCCTGCCAACTCAGGGGACAGATGGAGCAGGAGTGGAGAAAGGGAAAGGCAGGTCTGGGGTGTGGTCGTGTTTTCTTAACTCTGCTTCTGTCTTGCTCTCCCCTCCCCTGGCTTTCCTCTCTGCCTGCTCCTGTCTCTCCCTGGGGTTTCTGGTGGTGGAAAAG
Seq C2 exon
CTCAAGCCTTTGCGAAGCTAATGACCTGCCTCTGTGCGAAGCTTACGGGAGGCTGGACCTCGACACAGACTCTGCTGATGGCCTCTCGGCCCCTCTGCTGGCGTCCCCGGAGCCCAGTGCTGGCCCCCTACAGGTGGCAGCCCCTGCCCACTCCCATGCTGGTGGCCCTGGCCCCACTGAGCACGCCTGAGCCTCCGGGGCCACGCTTCGTTCTCAGGAACAAAACCTGAGGCAGCCCTTTGGATGCCCTCACAGCCTTGCTTCTCTCAGCCTAGGTTCCCATTTGGGGACTTCAGGACCCCAGAGCCACTAGGACTTCCTTGGGAAGCCCGTTAGCCCAGGGTGGGTCCCGCCAGGACAGTAGGGAAACAGTTGTTTCCCTAGCCATTTCCGAATAGCCCATCATTCCGAGTCATCATCTCTGTTTGCTGCCTTCCTGGCCAGCCAGGTGGAAGAAAGTTTCCAAGCTAGGTCTGGCCCGTTGGGGATCTCAGCAGTGGGGCAGGAGGGTGCCTGATTTCGGGGAGTCCTGACCCGAGCCTGTTGTCAGAGTTGGGAGGGGCTCTGAGCAGTGTTGGGCAGGCCGGGTCTCCCATCCCGAGGCCAGCGTTCCTGTGCAGAGCCCCATCCACTGGTTCTTGCCCTGAGCCACATATGTCTGTGCCATGGGCTGAGTGCCACGACAGGCCCGTGTGACAGCTGCTGCCCACGCATGTGGAAGCTAGGTGGGACTCATTCCTAATTCTGCCGTTGTAATGAGACTTGATTAAAACACCGCCACTTTTTTGCATTGCTGCTCTTTCTTCCTCATTCCTTGTCAGTCCAGGACCATCCTTGGTCTCCCAGCAGTTGTCCGAGCAGCAGCTCCTCAGCTCTGCCTGGACAGCCTGGCCCAAGGTCACTCTCTCCTCATTGGCACCTGGTAGGTCCCCAGTATTCAGTGAATGGACCTGCTGCCATCATTGCACATCCAGGCACCTGTGCCTCTGCTGGCATCTCATCCTCACTGCTACCAGAGCCGGTGCTCCTAGTGCCGGTATTTTAGAGAGGAGAGGATGTGGACTTAGAAGGGGTGAGGTGTACCACGGCCACAGAGCTAGGAAGTGAAGTGGCAGGAATCAGAACTTGAACCTGATGGAAGTCTAGACCCAGTGTCTTTTGGTGCCAGGCTCACCTTAGAAATGCAGAAGTCACAACACTGGGCAGGAAGTGTGGGGGGAGCACAGTTCGTCCACAGGAAGTGTGGGGGAGCACCCCACCCCAGTTCCTCCAGCACCATCCATGTGCTTCATCTTCTCATGGGGGAGGCCATCATCTTTCCCGATGTATGAATGAGGTGACAGCCCAGGATCCAGCCTTGGGGACAGGTAAGAACACAGCTGACCCATCACCACCTGAACCAGAGAACCCCACAGCCAAGCAGAAGGCACCAGACAGACAGGAGCTTGAGGCCCAGTCCTGGCTCTGGACCTGGCTTCTGGGGTGGCCTAGGGAAGTTGCTTCCCCTCTGAGGGAGAATTTCCCCATTGATACGTGTGGTGATCTGTTCCCGCACTATTTTAGCTGTGGAAATGCCTTGTACTTAACCACTGAGGAAGAAAAAGATTACAACCAGATGGAAGCATATATGAAGCGAGAGCCCGGAAGGAACTGGCCAGACTTTGTGGTGGGATCCCACTTACCCTGTTCCTAAAATCCTGAGCGATAAGACCTGCCATCAGCTTCATTTTCTGCTTGGCCAGGACCATCATTCCCATGTGAAAATCAAGTTATTTCTCCTTCTTAAAGCCAAGCCGCTCTGCTGACCTTTTTTCCTCTCCAGCTCATGGCCTTGGCAGCAGAGCTCCACGGGGAAGCAGCTGATAACCATTTGCAGTTCTCTCTTGGGCCTACGTCAGACAGGTTTTGTCTCCATGACTCTAGCAAAACTACACCTATTAAGGTCACCAGTGGCCTCCACATTGCTAAGCCCCGGCCCATTCTCAGTCCATGTAACTCTTTTATCCCAAGCTTTTTATTTTGAGGGCAGTGGAACTCATGGAAGTACTTGTCAGTTTGCCTCTCTGAGCACATTCTCCTTCGTCCATCACCACAACCAGAATGGATGATGATTGCATATCCTCTGGTATCTAGCTGTATTCAGATTTCTTCAGTTGTTCCCCAAATAGTTTTTTTAATGCCTATTTTTTTTCTTTCTAGTCCAGAGGTCTTTTATTTTTTTAACACCCACGATGCCATGAATTCATAGGGAAGAGGTTCCAGCAGCTCAGGCTCCTTCCCATTGGTTCTCACAGTGTGCTGCTCTGGGTGGAGCAGGCTGGCGCTTCAGTTGAATCCAGGTACCTTTCTCTTTGGCTTCCCTCTTTTTCTGATCATTTTCCTTCACGCGTTTCAGGAAGCTCTCTCGGCTCTTAGAGTGCTTAGTGTGCTGAATATGCACATTCATTCTCTTGGCAAGAATCTTGCCCTTACTTGTTTACAACAGTGCCAACAGCATGCTGGGGAACACTGTAGACTCTCCCAGTCTAGCCATGGTGACATTTGTGGGGCATTCCTTTTTGAACAGTACCCATTCCCTTGATATCTACAATATCACCTTTCTCATCAATTTGCATATACTTGGCCAAAGGAACAACTGCATGTTTTCTGAAAGGCCTAGAGAACATATATTGGGTGCCTCTCCTCTTTCCCTTTGTGTTCGTCATTTTGGCGAATTACTGGAAGGTGGCGGTTCCAGCTGAAAGGCTTTTATGCCTGTTTTTATTGTGTGTTGCATTTGGTTGTTATTTTGGAGTCTTAAAATCTAAAACAGGACCAGGTCAGGCCCAGTGGCTCCTGCTGTAATCCCAGCACTTTGAGAAGCCAAAGCGGGTGGATCACTTGTGGTCAGAAGTTTTGAGACCAGCCTGGGCAACATGGAGAAACCCCGTCTCTACTAAAAAGTATAGAAATCGGCCGGGCGCGGTGGCTTACGCCTGCAACCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACCTGAGGTCGGGATTTCCAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAAGTATAGAAATTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTCGGGAGTTCCAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGCTGGTCCATGCCTATAATCCCAGCTACTTGGTAGGCGGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGGGCCACTGCACTCCAGCTTGGGCAACAAGAGCGAAACTCCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148297:ENST00000610672:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF061797=Med22=PD(52.1=87.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development