GgaINT0126007 @ galGal3
Intron Retention
Gene
ENSGALG00000003204 | MED22_CHICK
Description
NA
Coordinates
chr17:7526118-7530797:-
Coord C1 exon
chr17:7530589-7530797
Coord A exon
chr17:7526653-7530588
Coord C2 exon
chr17:7526118-7526652
Length
3936 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TTTTTTTTTGTTCTGGAAAGCTA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTTCGAGCTGGTGAGTCCTTGATGAAACTTGTGTCTGACCTGAAGCAGTTCTTGATCCTCAATGATTTCCCCTCTGTAAATGAAGCTATCAACCAGCGCAACCAGCAGCTGAGAAGCTTGCAGGAGGAATGTGACAAGAAGTTGATTGCACTACGGGATGAGATCTCCATTGACCTGTATGAGCTAGAAGAAGAATATTACTCTTCCAG
Seq A exon
GTACAAATAGGGCAGTGGACTTCTGTCTAATGACTCCAGCCCTTCTGGGGGAGTTAGTCTAAACAAATAATCTTTATAGCATAGGTCTTGAGAATGTTCCCAACAAAATTCCATTCCTGTTCCTAATTTGGTCAAACTCTTTCTGTAGTTTAAAACAACTGCCTCTTTCTTGCAGATATCCTGCAGGGTATAAGTGTCATATTGGAGGAGGTATTCACAGCATCCAGCTCTAGGTGCTTGCCTTAATTGGCTAGATGTGACAGGTGATTACAAAGGAAGCCTAAGCAAATTATAGCAGATCAGTTTCCTTAGGGGGTGATATCCTTCTGGAGGAGTCTCTATCTCTCCCTAGGAAAACTAGCTTGCTGAGCTGGGTGCTGATCTTAAATGAGATGGTGATGTCCCGTATCCCCGTTGCGAGTTCTTTCATAAGTGACCTGCTAACACAGTGTGCCTTTTACCTTGTAGTCCACTGCCCCAGTTGCCTGGAGACTTCTTGAGGTGAACATCTGAAATGAGCAAAAATGATGTGCTCAGTTTCATTTGATTATGAAGTATTGTGATAGGATTTTTTTATGGAAGATTTATTAATGATTTGTTTGAGGAATTTTTAAGATTTTTAAAAAGACTTTTGCATAGGAAACAGGCTTTAGAGAATTCAGACACTTTATTTTTTTAATTTTTTTTGTTATGCACTCCAGCACTTCTAATTGATTATGCAGTAAATGAAAGCAGGAGAAAATAACTGAGAATCAGATTAGATTGTCTGCACTGTCCAAACTAAGCGAAGTCAGTGCAATAAAGGTGTGAATTCCAATCAAAAACTTACCTTTTCAAAATCTTACTCAAAATCCTTATGACCAGGTTTTCCACTGTTGTTTCTGCTCTCTTTCTAAACATTGAGTGTCTATAGTTCCAGATTAATGAAAATATTTAAAACAATAATTGCACAATATACTTGGCAGCTAGGGCATTGTTTATGGGTAATGTATTTTAAGAGTAAAACTCTTTTTAAAGACTTCTTAAAAGTTAAGGTACTGATATAACATAGCTTAGAACCAGCTATGTTGTTTAAAGAAAATTTGAGATAAAAGTTTAGAGTTGTTTTTCCAGCTTTACTTAGTTTTTTTGGGGAACTATGGCAAGGGATCCTAGAAGTGCCTCAGAAAAGAAGAGTGATCAGAAACCTAAGCATGAGTCTTGGCATGACTAGGTCATGGATCTATCCACTGCACAGACTGTGTACAGCATGGCATGAGCTGCATCCAGAATGACACAGTGTGGAGTTAAGTGCCCCACGAGTGCCGGAGGTGCCTCTCCCATGCTGACGCCAGGCTGCCACGACTGTATCTCAGTAGTTTTCTGTTCTGAACTAAGGAGTTCAGACCATGCTATCATGGTCTCTTCACCTGACTGGCATGGCATGCCACCTGAAGCAACCCTTCATAACAGAACTAACTTCTAAGCACAAAGAGCTTTCTTTCCTGATACACTAAAGTGGATCTGCCTTTGTTTTCATTCTTGTGAGGGTGGTCCTGAGATGAGGAAACTTGGCTTGTCCACAGAGCTATGATCCTTCTACTGAAACCTCACACCATGTAGCACTTAATCATTGCTTTTAGCACTTACTACTTTCCTATGCTCTTTCCTGTCTTTTTCTGCACCAAAGAAATTGTGTGTAAATACAGAAATGGTGATTTATTCAAAGTCCTTTTATAATTAGAATATTATGATATTTTAAATGAAATTTTATTGTCTAATGTGGGGAAAGGGTTTCTGTTATGTCACATAGCCTTAGAGTGTTGATCATGTTTAAATGGCAATGAATGCAAAAGCTGATTTGCTCACAAGTGGGCATTCTGTGCTGACCTGGGAGCCTAGTTGAGGTTTCCTCTCTGTTCTCTATTACTTCCCTTTGGGGCTTAATCCCACAGGACTTATAATGAGTCCTGTGAGGCCAGGATGTTGGTTCTATACAGCCATCCTACCAAACTGTTCTCTGATGCCCCAGATTCCCTGAAGGATACTGGTGAGTTTATTTTAGATGGTCAGGTTGTCCTTCCAGGGAAGGCTACAGAGAAGTGAGCTCCCTGGAGCAGCGTAACTGCAGGTGCTGCAGAGTTGTAAACTGCCCCATGCTGCATAGCTTCCTTTCTTTCTCTGTGTTGTTAGCAAGAGCTGTAGGAGGACTGTAAAAGGGAATGTCTTGTGCAGCAATTGCCACTACCATTGGTGCCTAAAACTGAAGCTGAGTAGGAATCTTCACTTTCAGTCTCTGTTCAAGTATTTTTCTAAAGCTGTTCCTTTGTGCACAGATGTTGCTGTGCACCCTGAGGGAGTAGAGAAATCCCTTCTGCACACTAAGAAACCTTTGGTTAATGGACAGAGCAGAAGGTTGAGTGGTAGTGCTGTGGGCTGTGCAGCTGCTTCTCATTCAGCCTGCCTTTCAAGGAGTGTACATGAGAGGTAGAGCTTAGACTTTAGGAAATGTTGTTTAGGACAAGGGAGAAGTACCTACACTACTGATACAGGTAAAACGTTCTTAGTAACCAATCTATCAGGATATGCATGGATGCAACGTTTGGGCTCACCTTGGAAGCCACTGTTTGATGTATAAAACTGTCAGAAAAGGACCACAGTTCTGATTTAGTCCCAAAGGTCTTCACTAATTGAATACAAACTTGCTTTGTGTTGGGGACTCTAAGGCAGGGTGACTATCCCCCAGCAAGAAAAAAAAGAATCTTCCAAGAGATTTAACAAAGGCCCCAGATATAAAACATATATCCACTGCTTTCCCACTTCTGGTATGAAACCAACTGGGTGATGCTGTCAGAAAACACTAAAAAAAATGTGGTGCTTGCAACTAGTGCTTCATGTGCTTATTCTTCAAAGCAGTAAGCCCCAAGTCCAGCTTTTTTCATTCTAAACTCCAAACTTGTATTTATGTTCCATTGCTCCCTCCTCTGAGATCGCAGAAGCTGTCTTTGAGTGTGGACTTAAATCTCAGCATTTCATGTTTGTGCAATTTGAAGTGTCTCGTATTTCTGCACTTAAAAGTATCTATTCAAGTCCATACATTAAAAATGTAAATAAAGCTGCAACAACAAAAATCACTTGACCCACTGGGTTTGTTTTACTCCAATCACAAGCTGCTTTTTGCTCCAGCACTCACTTTGTCTTGGGTGTGTCTCTTGTGCCTGCAGCTCCTTCCTCTCTTTGGAATTTGTTCTGTTTTTGTTCCGGTTTCTTCCAACGCTTTCGTTTTCTTAGTTTTGGCCCTTCCACGTTTTATTTTCCTCGGACCACACACAGTCAAGAATCAGACAGTTGTTTACTCTCCCACACTGCTGTATCATCTCATACTATAGTTTGCAGGAGTCAAATCCAGTAAGCTGCTTTTGTAAGGACTGTGGTACTGCTGAGACCTGGAGAAGCTGTCAGTGCTTCATAGGCTGGGGATTTTCAAAAGAAGACCGAGGTCTTCTGTGGGACACTTTACTGAGGTGGTAAGGGTGTCAATAGACTTAAATTTAGAGCACGATTTGTATTTTTTTTTTCCTCATGTAGGTTGTAGTAGAACTCCTGTCTTTGGGGTACCAGAACCTCAGCCCAGATCTATCTATGGACTGGTAGTGTCTGGATTAGAACTGAGACTCTGTTTCAGTTTGTAGCAATAACTTTGTCTTTGAAATTTCCCTGATCCTTACTAGGCTTTTAAGATTGAATACCAGCCTTTACAGGGTATTTTGGGAAAGACCAGTGTCACAAGACCTGTGATGAATTTGTGAACACAGGCCTTATATCCATGAACATTTTTTTGCCATTTTCTTAATGCTTTGCTTCTGTCTTGCTTTTCTCCCTCTCCTCTTTCCTTTCTCTCCTCCTTTATCATTGTACCTGCTGCCTCTCCTTACTGTTTTTTTTTGTTCTGGAAAG
Seq C2 exon
CTACAGTCTATGTGACAGCAATGATCTACCACTGTGCGAAGCCTACTGGAGAGAAGACTTTGATATGCCGTCTCCTGAAAGCCTCTCCATGCCTCTGACAACTGCCACGGCAGAGCAGAGTATTGCTACCTCTCAGAGCTCAACCCCATCACACCCTCACGTGAACGGGCATGGGGCAGGCCCTACAGACCACTCCTGAAGAGGATTCTTTGCTGCTGGACACATTCCTCCTGGTGGCACTGAAGAAGTCTTCCACCTGCTGTACTGAGCAAGCATCTTCCCATCAGGACAATGCACTGGAGCTGTATTTGCAGGTTTCTGCTCACTGGATAGCCACAGTGCTTTCTCCATTCCTGGGACATTGCCATGAGTGTTCCTCTCACTTAAAAGAAAGTGATAAGTGAATACAAAGCTGATTGTTCTAACGAATTAGAGTTAAGTTTGCTTTTCCACAACAGTTACACGTGGAGTTGATTAGAAATCCAGTGTTTGTTTCCATTTGAATTTCACAACAAGTACATTGTGGAGTGCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003204:ENSGALT00000039339:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.606
Domain overlap (PFAM):
C1:
PF061797=Med22=PD(52.1=87.1),PF146811=UPRTase=PD(47.4=77.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]