BtaINT0091563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000382 | MED27
Description
Bos taurus mediator complex subunit 27 (MED27), mRNA. [Source:RefSeq mRNA;Acc:NM_001040546]
Coordinates
chr11:101979720-101997406:-
Coord C1 exon
chr11:101997365-101997406
Coord A exon
chr11:101979798-101997364
Coord C2 exon
chr11:101979720-101979797
Length
17567 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTTCTCCTTGGTCCCCAGGTG
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTTGATATATGGTCCAAATCCAACTATCAAGTGTTCCAAAAG
Seq A exon
GTGAGTTTTCCTTTTTGCTTCTTCCTTAAGAGGCTTTTAGGGAAATGCGATGACTTCCAGGTGGAAATATTGGTCTTAAATCAGAGACCTTTTAAAAAGTGAAAAAGCCAGACACAGAAGCCTGCTCAGTGTAGGATTCCATTTATGTGACGTTCTAGAAAAGACAACATCAGTGACAGAAATCAGAGCAGTGATTGCCAGGGCTTGGGAGTGAGGGCAGGAGATGGTCCCCGGAGGGCTGTCGAACAACATGTTTGGGTGATGGAAATATTCTTTGTCATAATTATGGGATCACGCAACTGTATGTTTCAAAACTCACAGACTAAATGCCTACAAAGGGCAAATTTTGCTATGTATAGATTATACGTTTAAAGAAAAAGGGCTCTTGAGTTCCCCCAAGATTAACCCACGGCTTTGTTTGTTCGTTTAGTATTCACTTCTTTTTGGCTATGCTGGGTCTTTGTTGCCGCGTGTAGACTGTCTCTAGTAGCGGGGAGCAGGGCTACTCTAGCTGTGAGCACAGGCTTCTCGCTGCGCTGGCTTCTCTCGCTGTGGGGCACTGGGCTCCAGGGCCTGCGGTCTTAGTGGCTGTGGTCCTTAGCTGCCCCCCTAGCGTGTGGGATCTTCCCGGACCAGGGATTGAACCTTTGTTTCCTGCCTTGAAGGTGGGTTCTTAACCCCTGGACCACCAGGGAAGTCCCACCGCAGTTTTTAAATTCAGTTTCCCACAGCCCTGTAATCCACACATGTGCCTTAAGGACGGGAAGGAGGCAGGCTGGCCCCCTCACCCTGCTCCACCCCACTCTGTACTACAGTGACATCTTTTCAGGTGTCGGGCTTCCTGAAGGAGAAATACTATCTGGGAGATGTCAGAAAAAAAGGAATGTGACCAGAGAAAATCCATTTCCCAGCTCCCAGTGGTGGAAGGGTCCCTTCGCTGGACCAGCTCAGAACCTGGGGCTTCTGAGGGCTCCTCCCACAGCACTCAGGCCAGCTCCCCGGCAGGGCATCGGCCTCCTCCTCCTGTGCCCCCGTCCTGTCTGCTCCCATCCAGCAGTGCAAATGATAGGGGAGGCTGTCAGCTTGCTTGTTGCTGCCTCGTTCAACAGCAGTTGTTTATTTACCCCTTTGCCATGTGCAGGTTCTGGGCTCAGTGCTACAGGGGAAATAAGACAGACAGGGAGAGAGGGTCAGGGACCCCAAGCTGTTACCTGGGGCCGTGGTCGAGGACAGGAGGGCCTCCTTCACATCAGAGTGGTCGCAGGAGTCCTTGATGCAGCACGAGTTAAACTGAGACAGGAGGCAGGGGAAGAAGCCAGCCATATGGAAAGCCACGGAAAGAGGGTCCCAGGCTATGAAACTACAGCCCCGAGCCCCGTGTGGACGGGGGACTTGGCGTAGCCCTGCACACCACGGGGGCCCGGGAGATAGCAGACAGATGGAGGGCAGGTGGGAGAGTGGGGATTTTTGGCCTGGCCAGCAGGCGCCCCTCAGTCCTGGTGCAGAACTTGAATTTTATTCTCAATTCAGTGAGGAACCACTGGAGGGATTGGTGTGGAGGAAGGACACGATTTTCAGGGCTGGGCCCGAATTACCCCACTTGAGTAATAGCTGTGTCCGGGGTGTGCCGGTAGCTCAGCATAGGATAGTGGTGGTGGTTTTTTCAATTGAGGCGAAATTCATATAACATAAAGCTAACCATTTCTAATCATTTTAAAGTCAGCAGTTTCATAGCTTTTAGTACTTTCACAGCATTGTACAACCATCACCTCTATCGCATTCCAGAACATTGTTCTCATCCAAAGGGAAACCTTGTTCCCATTAAGGCGTGGGCCCTGGGCTTCATGGGCTTCCCTGGTGGCTCAGACGGTAAAGCGTCTGCCTGCAGTGCAGGAGATCCAGGTTCAATCCCTGGGTCAGGAAGATCCCCCGTAGAAGGAAATGGCAACCCCCTCTAGTACTCTTGCCTGGAAAATTCCATGGACTGAGGAGCCTGGTAGGCTACAGTCCATGGGGTCACAAAGAGTCAGCACAACTGAGCGACTTCACTTTCTTTCTGGGCTTCATATCAAAGAAGCATGATGGACCAGCCTCTGATGGTGACTAACGTGCCTCAGTTCGTAGTGCTCCCTGGACCCCTCTCCAGTGAAAGGGGGAAGCCAGGGACAGGTGTCCAGGGCTGGGGAGGGTCTGAGGCTCACTCCCTTGTCTAGGGAGTGTGTGCAGGCAGGAAAATGTCCTGGTCTTATCACGGCTGCGGGCACTGTGCTGCCCCGGACTGGATCCAGAGCCAGGAAGGACTTATTAATGGAGAAACTGATGAAATCCAAATAAAGTCTGGGCTCGACTCAGTAATAAGTTAGCGACATTGGTTTCTTCGTTGTGATGAACTTACCTGATGATGACAGATGCCAACAGCGGGGAAACTGGGTGTGCGGTCTGTGGGAACTGTGTGTGCCGTCTCTGCAGTGTCTCTGTAGACCTGAAATTGGTCTGAAGTTTAAAATTCATCTTAAAAAGAAAAATCATAGTGTTTACTCTTCTAACACATCTTTACCCAACTGAGGTACCCAGACACAGAAAGGAAAAAACAGCCTCCCTCCCTGGGTCCAGCCCCTAAAGCGAAGACGTCCATAGTCACACGGGGCTAGCGTGGGCGACACCGTGTTAATCCAGGCACTCTTATCTAAGTGACCAGACCAACTGTACCTGTTCAGCTCACATAGAGCCTCGGCCTTAACTGCTAACTCTGTCCATGCCAACGGCTCTTGTCGTTTCTCCCCCAGCAGCTGGTTGAAAAGCATTCTGAGGTGAAAGAACACTGCTCATTATCTGTATCTTGTTTCCCTTTCACAGTGAGGAACACTAAAATGTTTTGGGTTTGTTTGTTTGTTTAACCTGGTTTATCTTCGTGGCTTCTGGGCTTGCAGGTGGTTACTTTCTGGCTCCAGGGAAGGCAGGCGATGACTTCAGCCCCTCCGCCGCCGCCCCCCACTTCCCAGCATCACAGAACCACAATCTGGGATTTTAACTATGGTCCAATTTCCATTCAGATACCCTTCATGAGGGAGGGCCTTGCCTAGGCTTGCCTTGGCAAATACATTTTTTAACGTTCTGTGTGGTATTAAGTATTTTTGAATGCAAGCGGAAAGTTTATTAGGAAGTTGTAAAATGTGTGAAACACAGATTTGGTGAAGCACAGATTTAGAGAGACAGTGCTATATTTGTATTCTACTGCCCCTAAAAATAACCTGCCAAGCGCTCTTTATATGTCTTTAAAACTACAAACACGGTGCGGCAGGGTTTAAAATTTGATATTAGCTAGTTGGGGAGACTCCAGAGCACCCACCACTTTCCTCCTTGTAGTTTATATAACCTGTTCAAAGCAGCAGAAGTGGAAGAATTTGTAGAGATGGGAATTTTATTTCGGCCAGTGAATGGCTTGGTGCCTGTTTGTGCATCCCTCCCCTCACCTGTATTTTAACTAAATGGACTTGACCTCTGAGACTGACCTGCACTAGATTCAGTTCAGTTCAGTCCAGTTGCTCAGTCGTGTCCGACTCTCTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAAACTCATGTCCATCGAGTTGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAGTCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCCCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATTATTCCCTCCAAAGAACACCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAGGAGTCTTCTCCAGCACCGCAGTTCAAAAGCATCAATTCTTTGGCGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCGTACATGACTATTGGAAAAACCATAGCCTTGACTAGACGCACTAGATTAAAGAGTGACAGTTTGGAGGCAGGAGAGTGTGCTTTCTGATGAGAATGAAAGGCAGGTGATGGTTAAGGTCCTTTTTCTCTTTTCAGGGGCAGGTAATAGTTACTGGATTACAGAATCCACTCCCTTCCCTCCAGAAACATTGTCTGTCTGTTGTCAAATGAAGAGATGTATTGGAAAATGACGTAGCACAAAATTGAGTTGAATCCTTTATCAGTAAAGTTTTCCAGCTCATCATAGTCGCGTGGCAGGGCGTTGGGATCTTGTTCTCTTGGGGAACACTGGTAAAGAGGATGAGGAGTGTGTAATGTGGAGTCACCACGGGGCAGGGGAGTGACCGCACTGGGCTTGCTTCATTGTGTTCGTCTCAGGCCGTGTTGGAGATCGGAGGGCAGCCCTCTCTATTCCACAGCCTGACCACCCACTGAAAGCAAGGCTGGGGCCATATGTTCCCTGCAGATTCTGAAGGCCGGGTCCAATTGACGGGATGATGTTTAACATTTCAAACTCAACATGCCAAAGGAAGAGATGAGGTGGCAGCATTTCCCAACTCTGCTTTTTAGTATCAGCTTTTTCTTAGAATTCTATTTTCTTCCTGTCCACCCACTTAAAGTCTAGGTGTCCTGATTGATGTTGCTTGTAGCGTTTCCCAGAAAGACACTGCTGGGGATCGCAGTGGTGAGCATTCCCTTCTGCCCGTCATCCGCCTGCTGACACCCACCCAGCAGCCCCACCAGGGTAGAGTCACTTGAGTGCCCTGATCCAGGAAGATCGACCTGGAACAGAAGTCAAAGTGACTGAGAAAGTGCGAGGTCAGGGAGGATCCTTGGTCACCAGCGAGAAGGCATTTCTCGGGCAGAAATGTGTCCTAACCGTGTAGGTAGATGGCAGAGCTGCGCCCGGCGCTGAGGTGGGGACACTGGCTGCCAGCATGACTGTCTTGGCGTCGCTTGGGGAGTGCTCTCTCTGCATTGCCCTGGGTTGAGCCCCAGCGCTCCCTTTCCTCGGCGCTCACTGTGTGGTTGCAGTTGCTGTGGAGTGTCTGTGTTTTCTTGCCCACAAGCAGCAGCGGTGGCCACTGCAGAAAGAGGCCCGACGGGAAGGCGGGAAGCCGTCCCAGGTCTTTCCGTGCGAAGTGACACAGCTGGAGGCGGGAGGGGGCACTGACTCACAGAGCCATGCCAAGCTCACACTCGCCTTTTTATTTCTGGAAACTCATGCCTGTCAAATTCTCCTCGGTCTGATCCTGGCTCCCCAGGTTAAAGACGAGCACGCAAGGTGCCACAGCAAACCCGGCTCCCAGAAGCTAGTGTGACCTGCCTTTTGTCTGCTACAGGGCCTGTCGGTGAGCCCTTTCCCTCGTCCTCATTAGCCCCCTTCCCCAGTGGTGGGGCGCGGTGGAGGGCCAGGGACAGCTGGCCGTGGGTCCGCGGCTGCCAACAGGCCCCCGTCATTTACCGTGGTGCCCTGGAGGCGCTTTGCGCTTGGTCCTGGGGCGAAGGAGCTTTTTATAGCCGGCAAGTCTCCAGCAGAGCAGATTCAGAGAATGGAACTTGGAAATAGGGGGGACCGTCTGAAAGGGCAGAATCACAAAGAGCCAGGAAAGGTTTCAAGCATGTTCGGATTTTTCTGACATTTAAACTCTGCAGGGGCACTCACTGTTTTGATCTTTTAACCTCCTCTCTTCAAAACAGTGGGCATTTTCATCCAGTAACTTGGGAAGAACGGGAGCAACTCTATAGCTACTTACCGAGTTAAATCCTGGCAAGGAGGCCAGAGAGAGAGGGAGGGCTCTCAGCCCCAGGCAGGCCGGAGGGGACAGAGAGGTGATGTCGGAGGGTCCGCCACCTGCGTCCCAGCTCTTTCGCTCAGGGGCAGGCAGGGCACAAAAATCCCAGCCCCAGGTGTCCAGGGCTGCCCCGCTCCGCATTCTAGGGGCAGCAGAGGTAAGAGGAGCCTTTCAGCCCCGTGCTGAGCTTGGCGTGGATGGGCGGGCTGGCTGCCGCTGCTCTGTTCCTGGGTTCACCCGCTCATTCGTCTGTTAACTCCCTCAGTCAGGCTTCAGTCCCTACACTGGCCTCTGTCAGGGAGGCTTCATCAAGGGGAAGCTTTATCAAGTGGCTCCCCAGAGCTTGTCAACAGATGAGATTATGTCCCAGAAAAGTCAGTTCTCTGAAATTTCTGAGACATTGAGCCCCTCGCATAAATCTAGGGCCTATCCAGATTGTTGTTCGTTGGCTAAATCACATCCAGCTGTTTAGCCACCCCATGGACTGTAACCCGCCAGGCTCCTCCATCCATGGGATTTCCCAGGCAATAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGCCTCCCCAAATAGTCTGTGACAAACCTAACTTGTCACCAACTCCGAGCCCAGGAAGGGGGGCTGTCCCAACATGGGGTGTTCCCAGAGGACAGGACTCTCCTCTTGCTCAGGGCTGTGCATGTCTGTACCTGCTGTAACATCGAACGTCCCCAGAGGGACTCAGTAAATACTCATTCAGTTCTTTTCAGTCTCATGCCTTAGAATATCTAAATACCTTCCCACCAGCTCATTTCCATTTTCTTTCAGAAGCCTCTCTTCAGACAGCTCAGAGAAGGCCCTGGAAGGGCTGTGGAAATCCTGCCAGGTCTCTGTCCTTGCTCTTGTCGGGTGTCCTGCTCAGATGAGGCCGTCAGCAGAGGCCCTGCACCTAGAGGGGACACCCCCCAATCCAAAGAGGGGTCTCACATTGTAGGAAGGGCCTCTGTTTTGTCCCCTTTACTCTTAAACGCTGTCTAACCTTTTCCGAAAGGAGACACACGCAGTGGAGCCGATACGGTGTCATCGTCGTCCTGTTTCCATGCCTTCTGTCCTGCCTCCCACGTGTGTCTTCGTAGCCCCAATTGGAAAAGCCAAGGGAGCACCTTTGACTAGTGAGGGGCTGAGGGGCAGCTTCATGAAGGAAGAGAGATTCCCGCTGGTGGTCTCCATGAGCATGGTAGGGGGATGCTGCAGAAGCCAAGCCTTGGGCTGTCGACAAGCTTCAGGACAGGAGAGGTGATGGACAATTCCAGGGTCATCCCAGAGGGCAGTCCTTGCCTGAGCAGAGAGCCAAACTGCATTGACCTCACTGGGTCAGCAGAAAGGAGGGAGGAGGGGATGTCATTAAGTGTCAGCCCAGGGCCCTGGGAGCTGAGAACCGGAGCGGGCGGGAGGAGGGGCATTCTGCTCACCCTGAGCCTTGATCACCACATTGTCTGTTAAATATTCACAAGCTTCTAAAGCAGGATAGGGTTGATGGCGTACTTTCCCACCTTACTACCTCTGCAAGGCTCCCTGCACCTCCGCAGAGGGTGGTCGTGACCAAGAGCCTCCCATGGACCCAGGCTTGCAGTTACTGTGAAGCAGGAGAGCCCGCCCACCGGCGGGAAGTGGTTTGCGGTCTCTACCATTAGAGGAGTTGCAGAGGACCTGCTCTTGTCTCGTAGCTTCCTTCTTCCTGAGGGCTTGCCCGAGACACGTGTGCCCTGGGTCAGAGCCTAGCAGCTGCTTCTGGGAAGCCCGGCCTCCTGCCCTTGCCTAGGCCCCTTCCCACACTCCCAGTGGCTTCCCGGCAGCGTGCCTGTCCGCCCCCCACCACGCCACCGTGAGGCTCAGCCTCACCGGTCACGTTCCCCACCGTGACCAGTCCAGAGAGAGGCGGTCCGGCCAGGCTGGCCACTACTCCCTGTGTGGCCGCCCTTGCCTCAGCCCCCTCATCTGTGAAACAAAGGGCATAAGGGTACCTGCCTCACAGGATTGGCACCCCAGATTATAGACCCCCACCCCTACCCCAGCAGTACCCTTTGGGCAGCCCTGACACACTGATGTAGAATCCTGGTCCTGGGACCTGAAACGGTGCCCTGGTGTCCTAAGAGGGCTGGTGGCCCCTCTGGCCATCCACTGAGATGGGAGTGTTCCCCACCCAGCAGGGCTGCTGAGAGGCTCCCAGCGCCACGGCAGCAGAGCCGCCTCTCAGGCTCTGCAGCGTCTGCTCTTTCTCCTGCGGTTGCCTCAGTTTCGAGGGGCAAGTAGGTGGTATTGTCTGTATTTCTTGGGAGCCCAGATGTCTTTGGATGTGTTTCTCTAACTGCCAGGCTGTTCCCCGCAGAAAATAACATCACACCAAGTGGGTACAGAGCAATTCAGGTGTCCTCGGGCTTGGGCTCTGCTGGCAGCCAGCAGCAGAACCTGGCATTTTACCATCTGGAAAGCACTGAACTTTTTTCGTTCGGCTAAATGAAGAGTCTTAATTCCTTAATCCTGGGAAACGTGAAGGACCTTTTGTGAGCGCCTCCTCTTGGCCCCGCACAAGGCCGTTGTGGTGGTGGTGTAGTCGCTGTCTTGTCTGACTCTGTGCACCCACGTGGGCCATACAGGCTCCTCTGTCCATGGAATTTCCCAGGGGAGAATGCTGGAGTGGGGTGCCATTGCCTTCTGCAAGGGACCTTCCCAACCCAGGGGTCAAACCCACATCTTCCTGCATTGCAGGCAGATTCTTGACCCCTGAGCCACCCAGGGAAGCTGCACAAAGCTGGTCAGGACTCTGGAGAGTTCTCTCAAGGCTGCCATAGAGTTTCTCTGTTCACCCAGGTGTTCCTCCCCAAGGTACCCCATGACCTCAGCTTTTTCCACCCCTGAACACCCCCCTTTTACTCTGCTCCCCTAACCCCATCGGCCAAAAATCAATCCATAGCTTCTTGCCTACTCCATCTCTCCTTCTCTTGGGGTCCTGCCAGGTGTTTGGAGCCAGTGCAGAGTATCGCCTGGGGCAAGGCAGGGACTTCTGGTCACAGTTGGGCAAGCACAGAACCGCAATGTCCACAGGGTGCTGCTGGGGGTGCAGGAGAGCCCAGGGTGGGAGGGGAGTCCCCTGGCCTGAGTCTCCAGGGCAGAGAAGTTAGCCAGGGCCCAGGCATTCCAGGCTCAAGCCTGGAAAGCAGAGTCAGGGAAGCCAGTCTGGAAGGAGGGGTTACTAAGGCAGCGGTGTCACTGGGGTGTGATGTGGGGCTGAGGGGAGACAGGGACCTGGTCATTGAGGACCACATACGTGTGCTCCCATGTCGGGAAGGCTCCTGCAGGCAGCTGCCGAGTGTCCTGGGGGAGACACATCTGCCTCCGGAGGGTTTGCAGCCAGTCTGTGCTCGAGAGTCCTGGGCATTGACGGGCTTTGCTTTGGGGCATCGGTGGCATCTTGGCTGAGACTTCCAAGAGGGTCAGATTGGAAACCCCTCACACCAGACAAAAACTTCTTTATGGAGCCCCAGTCTACGTGCCTCAGGCCATGTTCTATAGTTTACAAACAAGACCTCATCCTTCTCAGACAGAGCTTGAACTCAAAGCCACGAGGAGGGGTTTTGCACAGGATGGAGCAGTGTCTGCCTTTGCTCCCCAGTCCCTGCCCAGCCAACCACGTCCCTGTCGGCCCCGAGCAGCGTTGCCAGCAGACAGTTAGTTATAAGGCCTCATGAAGATGGCTCCTTCATCAGCACTGAAGGGAGTATTGATCTTGTCTAAGTAAATCCCCAGTCCCCTTGGACCTCGATGCCTCCTCCTCAGGCCTCTGGGCGTGTGAACCCATGGCACACAAATCCAGGGTACGGATTACAGACTCGAGCTGAGTGATGAAAATGAAACCCCATGCTTCCAGCCTCCCAGACTTCATCCCAGCGTTGGAAGCCAGTCTCTGCACTGCTCAGCATCGCCCCCAGCCCCCAGCACTTTTCAGGACTGGCTTCATAGCTCTCAGTTTTGAAATAGTGATGGTTCCTCTTTTTATGGAATGAGTACTTCTGGGACTGTGTTCAGTATTCTTCATGGAACCAGTGCTCATCCTTGGGGCAGCATTGCTGCCTCTTTAAACATTTAACTCACTAGGTTCACGTCTTTGACTCCCAGACCCACAGAGAATTTTCCCATTCCGTGAGATTCCCAGTGTCCCTCTCATTAAGGGCGGGTCTCTCTCCACCCGGTGCAGAGACCCAGACTTAGCTTGCAAGTGTGTCCCGCAGATGAAAGTTCCTTTTTATTGCTTTGAGTCGCAGAAGCAGCATGTGTACAACGAAGTAACAAATGTTTGGCTTTGCTGCCTGTTGGTCTGTGCTCCAGTCTCTTTGAAACCCACGGAGATGGGAAGAGGTTCCCAAGAACAGCGCTGTGCTGATGGTCTCCCTTGTTCTGAGCTCTTGGTAACCGGCCCAGAATTTGAGGACCCCATGAGGGTGACATCCCATCAGGACAGCAGGTGGAGGCAGGCAGGAACCCGGTGCTCCTGCCGCCTGCTGGGACCAGCTTGTCTTTTCTAAAAGAACAAAGGGCTTTCATGTCTCTCTGGTTGGCCTGAGGGCGGAGCACGACACTAGTGTGCCCTGAGGGCGTTCAGTCAGGCCCTGCAGCAGTGCCCCCTGAAAGCAAGACCTCGAGGCGCCCAGTGATCCCAGCCTCCTTTACTGAAAGCCAGTGTGGGGAGTGATGTGGCCAAGGTCACCCAGATAATTAGTGAGGAACCCAGGCCGGAGCCCCGGGCTCCCGACAGCTCCAGATCATCTTCCCCCCACCCCCTGACTGCCATTTGTTCGCGGTCATGCGGGCATCGAGACGCTCCCCTTCACAGCGGGTGCGAGCCGGCATTGCTGGCAGAGAGCCAGAGCTGGGTCTCTACCAGACTGTCTTTTAAATAAGCAACTTCTGAACACTCGGGCACTTAACTTCTCCTCTTACTCTTGCGGGATGGACTTTTCCGAGGCAGAGGCCGCAGCTCCCCTGGCTCAGCAGGGGAGGCCTTGGGCGTCTCGGGCTGCGTGCGGGCAGATGCTGTGCTCTCGGTGCCATCAGTCCGCAGCCTGAGGAAGGGCTCTGCGGCGCTGGGGGCCGCTGCCCAGGGGTGGGGAGTGGTGCCCGGCTGCCACCTCCAGAGTCTGGCGCGTCACCTCTGCTGTAGCGCCAGCTGTCCCCTCTGGCCTGGAAGCCCGCACAGAGTCAGGACGATCCTGCAACCTGAGTGGACTCAGGAATCCCGAGGATACTTCCTGGGCCACCACGAAATACAGCACATTCTTTTTACAGGAGGAAACTGCTGGGGGACGGTATTCTGTTAGGAGGGCCTGGTGCCCTCCCCGCATCTCTCTGGCCCTGTCTGTGCGTCACCGCTCTGTCCTTTGTTCTCCCCTACGGACATCTCCCCTTTGGGCTGCCCTTGTGGCTCAGCTGCTAAAAAATCCGCCCACGATGCGGGAGACCTGGGTTCAGTCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTGCCCACTCTTGTGTTCTGGCCTGGAGAATTCCATGGACCATATACTTCACAGGGTCGCAAAGAGTCTTTCACTTCCCCTTTCACAGACAAAGAACAGAGCCTATCTGGCCATCATCAAACCCAGGCCCTGAGGGGCTGGCCTTCAGCAGAAAGTAGTCTAGCAGGACTTGAACCCGCTCTCTGCCCCTCCCCACCCCCCCGGAGGAGGGCACAAGTTGGGGGAAGCGTGGGCTCTGAGTGCCAAAACCATCCCTGCAGCACCACACCCCCCCCACCCCCAGACTGTGCTTTGCGTTTTCCCTGCTGCGCACGGTGCACGCCCTACGTGACACTGCCGGCTTCATCTGCCCTGTCTCCCCCTTCATTCTGCAAGGCCGGGAGACTCATTCCCTCCTGAGCTCTGGAGGGTCCTGAGTGGCATTGTTCCTGGTGGGTGCTGGCTCTGGGTAGGTGGTTGAGCGGGACGGGCAGAAGCTTCCGGTTGGGGAGGCGGATGGCAGCCGCGCCAGTGGGGAGAGCTGAGGTGGCATGAACAGGCTTGGGACTGAGTCCCGCCTCCATCTGAGAGTCTTGGGCTCCATTCCCAGTGGGGAGGAGATGGCCTCCGCGGCCTCCTGTCTGTGTCCCCCTCCACCGCAGGCTCTGCTCAGGAGCCGCTTGGCTTGGGCATGTCACCTCCCTGTGGCTTCGCTGCCTTATTGGAGTGGAAATCATCTCCCGTTCGTAGCCTCCTCCCAGGGTTGTGGGGAAGGGGAGGGTGACTCCACTGGGTGGGTGTGGGCTGTGGGTCAGGCCCTTTTCATTCACTGTCCCTGTATTGACACATTTAACCCTTGTCCACAGCCACCTAGCTTGTAAGTGACAGGCACAATCCAAGCGGGTGCCGTCTGTCCCCGCAGCCTGGACTCCTCACCGGGCGCGTGTGTACAGCAGCCCTTGCTCAGAGCTGGTGCTCAGTAGCCGTCGCTGCGGAGCCCTGCCCTGGCTGCAGGTGGTTCCACGTAGGGCTCAGCTGAAGCAGCTCGTGACCTCCCCAGGACCCTGTCGATGTCAGCTCTTTGCGCACAATATGGCTGGGGAGCTTCGGGAGGCTTGTTGTGACTGGCGTCTCCTCCAGCATGTTGACTGGCAGCTGTTCCAAGGTCTCTTGAAAGACTCCTCTCTCACCTTCTGAGCTGAGTTCCCTGTCGGTTTGGGTGCAGGAAGACCTCTTCTGCCTCTCTCAGCCTGGGACGGGGGGTGGTTTGTAAGCTTGATCGGTGGAAGAGAAAACTGGGAGTCAGTTTCACAGAGCAGAGTGGGTGTGTTGGCAACAATAGAGACATCACCCTCCTCTAAGTGAGTAATCACGTGCAGTCCAGCCCGACCGGGGCTCGGGGTGGGGTGCACACCCCAAAAGGAGCCAGAGCATCTGCGGTTTCTCTTGGCCTTGAGGATAGATGGGACATCTCTTGACGGAGTCCCCGGTGTCTGCACACTCCTCGAGCAGGAGTGTGCAGACACTGTCTTTCTGTGGCGTCCTCTTCCCGCCCGTACGGTCACCCCTGCCCCCCCACCCAGTCCTCCTTCCCGCTTCCCCTATCTCCTTGGCTTATTGTTACTTTCATGTCTTCTCCTCCCTCCCTCTCCTTGGGTTCGCCACCCGCTTTGATCTCTTCTGCGCTGTCTTCAAACCCGCACTCACTGGTGGGATGAATGGCCTCTCTCCCGCGGGAGCATTAGTGCCCTTCTGCGGCCTCCGCTGCCGGCCGGGGTGGCTTTCATCTCCCAGCGGAATCTCATTAGCTCGACATCACAATGGGACCGAGCCTCGGTCGGGCTGGCCCAGAGTCCGTTTAAATTAGTTAATAGCCATCTTTGTTGTTGTTACCCCGGGCTTGTTTTTTTCCCCCACATCTTGGATGCTGAGCAAAAAAAAAAAATTTTGTTGTTAAAAAGTGTAGAGCAACACAAGTACTGAAGGTGGAATGTTCTGACACAAGGGAAGATCGCCGCGGGTGAATTTCTCCAGTATCTGACGACGGCGTGGTGCCCACCGCTTTGGAGCTCAGCCCCAGGAACGTGAAAACCAGGGGAAGAAATTTGGGAGGTGGCAGGGACGGAAAACATAGCGAACCGGTTAGCTTTGCTTCCCTCTGCTAAAATATTTCTGTAATTGGAGATGGGAAGTTGAAGAAATTCAACGATCGTGTCAGCGCTAGAAAAAGCTGCCACCATTTGGCAGTGAAGAGAATATACGGGGCCTTTTGGAAAAGAGGCTGAATTTGGCCAGGTTGCTGACCCAGTAATGGGAAAACGGAATCGGTGCCCTGCCTGGAGCCAGGTGCCAAAACGGAGCTTTGGTGTGTGACCCCAGCCGTTTGTGGAAAAGGACGTTTTCTGGTTAGTGCGCTTTGTTCTGCTCTCGAGAAGCCTTTTGCCCGGCAGCCACATTTCCAGACCTGACCTGCACCTGGCAGTGGGACTCTGGCTTTCTGGACCCTTCGCTGGGCCGGGGGATGGTGGGCAGATGACGCTGGGGCTCGGGACAGGAGCTTCTGTCCACAGACGCAGAGCTGGCCAGGGCGTCTCAGGAGGGAAGGCTGTATAGGCTCGGGTCTCGTGGGCTCCAGGCCCACACACCCCTTGCCCCTCCCCAGCTGTGTGGCCTCCAAGTTTTCATTTCTTCATCTATAAAATGGACCTGGGGGACTTTCCCGGGTGGTTCAGTGGCTTTGACTCTGCGTTTCCAATGCAGGGAGCCCAGGTTTCATCCCCAGTCAGGAAACTAGATCCCATATGCTGCAACTAAGACCCAGCACAGCAGAGGTAGAGAATCTGCCTGCAAAGCAGGAGACCCAGGTTCTGTCCCTGGGTTGGGAAGATCCCCTGGGGAAGGGCATGGCAACGCACTCCAGTAGTCTTGCCTGGAGAATCCCATGGACAGGGGAGCCTGGCGGGCTACAGTCCATGGGGTCCCAGAGCTGGACATGACTGAGGGACTAAAACACACAAAACGAACCTCGGAGACCACCCGCCTCAGTGCGTTCGAGGAGTGAGTGAGTGGGCACATGCCTCACACGCTCTCATCAATGTGGCTGTCCTCAATTCACAAAATCAGCCCACGGTCCTGAAAGAGCGCCTTTCCAAAATAAGGAAAACCCTGCCAGCCCACTACCATTACCCCGCTCCCTCTTTCCACTGCAGCATCATGAAACATGGGTAGTGTGCTATTTTTGATTCATGAAAAAGACAAGTGATCCTTCGAGTTTGTGGTCCTTGGTTTCCCTCATGCCCCAGAAGGAAATGCCTTTTTCTTCTACTGCCAAGAATACTCTGCCTCCTGAGCGGCCTGGCTCCTCAGCTGCAGCAGGGGCAGGCCTGGGGGGCTGCTGGAAATGCCCAGTCTTGGCCCCACCCCACACCTGCCTATAATAATTGGTCAGTAGTCATGCATGGATGTGAGAGTTGGACTATAAAGAAAGCTGAACGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGCCCCTTGGACTGCAAGGAGATCCAACCAGTTCATCGTAAAGGAAATCTGTCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGTGAAGAGCTGACTCATTTGAAAAGACCCTGATGCTGGAAAAGATTGAAAGTGGGAGGAGAAGGGGATGACAGGATGAGATGGTTGGATGGCATCACCAACTCATTGGACATGAGTTTGAGTAAGCTGCGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCAGTCCATGGGGTCACAAACAGTCAGACTGAGCAACTGAACTGAACTGAGCAGCAAGATCCCCAGGGGGTCTGTGTGCCAATTCACATTTGCCTCCTCCTGTATTTCGGGATCCCGAAGAACAGCTGGAAAGGCCAGCTTGATTTCAGGGCCCCCACCCCACAGATTAGATTCTAGGTCTGCACTGGGGCCGAAAAGCTCACGTTTCCAACACGTTCCTGGGTGATGCCTGAGCGGGCGTCCAGCACCAGCCTGCTTCTCCGCTCCGAGTGCTTGTGTTCACTCTTGTCAGCCAACCAGAGAACTGGCCTGGGTGTCTTAGACGAGAGGCAACGTAGCGAGCTTCCTGAGAGGCGTGTAAAATGAATGGTAGGAACAGGAGAAAGAATTCTTCAGAAACTCTGTTTCATGTGATGGCAAATGTGATTGTAAGGACTGTCTTATGAGCCTATAAACAGCACTCGTGTGGGACTTTGTTTTTAGCAGGCACCTGGATGGTAAGCACCAAGCTCTAAGCTCAGGCATCCTCGGGGCCCAGCTGGCTTCGCTCGCTTTGTAGCCGTTCATTTCACCCCGCCAATCACCACCCGCCATTTTGCCAAGTTATCATTCTACTGTATGGTTTTTTTTTTTAAGCCTTGCTCATTTTAGAAAGCTGTCTGTCAAAAATGCTTAAAATAAAAACAGTCTTTGCACTTGAAGCAGTAAGTACCATTTATCTTGAAAGTCACTTGGGTGAATTTCTTGGCATGGGTCGATATACGAAGCACGGCTGCGTTTGCAGGAAAACCAGCACAGGTGTTTCTGGTTCGTGACTTTTGGTGAGTGGCCATTGTATAGTTTATTTCTTTATTCAGCAAATATGTGCTGAGCACCTGCTAGATGCCAGGTGATAGTCTAGGCCCCGGGGACACAGCATGATCCTCGCCTGCACAGAGCTGGTCGTCTCGTGGAGTTCACTAGCCACCAGGCAGGCCCTGAAAGTCCAGTGGGAAAGAGGGCCAGTCCCAGGGCCAGGCAGCGCAGAAGAGAGGGGGCAGGCGGGCCCAAGGCACGGCTGGAGGATGAGCACTTCACACGCCTGACCATTTCCCCTGAGGGGAAACCACGGCTTCGAGAGGTTCTGTGAGCTGGGGAGCCTGCCTCCTTGCTCTTCAGGGTGTGGCCTCTCTGGCCTTGAGTGTAGACACACAGGCAGACTAATTTCTGGATCATTCATAACGCCTCTTGCGGAACCCAGACCAGACCAGCCCTGCTGGTTTCCAGCTGATGAGTTTGCTTAACTGCTGCTGAGGTCTGTCAGCGCATCATGGTGTCCTGGTGGGAACGGTGCCGACTGAAGAAATGCACACAACCTGGTCCGGCAGGAGATCCTCCATTTCTCAGCGGGAGGACGGATGAGTCGACGCAGGCAGACCACGCTTACTCGTGTTCACAAAGCTGATTGTTTTGTCTGATGTTTTTGTTTCCTTTTGTCTTTTGACCATATCATTTGTAATGGCGAGATTCCCTAATGAAGACAATCAAATAAACCATGAGTTTGAACACAGCTATCAAATTAGGAACAATCTATTCATCCGCTAATGGGTGGCAGGCATTAGCAATCTAGGGTGTCATCACATTTCAGAACTACAGGGGATCTTTGGCCAGTGCTTTGCTTTTTAGGAGGCACACTAAGACCCAGACAGATTCGATGGATCAAGGTCAGCAGACAGAGCTGGGGCAGAATCCCAGCACACGTTCCATCTGGTCCCCAGATGCCCCACGTGAACTTAGAGCCGTAATGCCCTTGGGCCTGCTGGCGGAGTTGTGAGAACAGCGGGTGCGGCCCACTGGACCACAGCTTTCAGGGAGCTGGCCAGACTGAGGACCACACTGGGAGCAGCACAGCTCGTCAGAAGGGTAGTATCTCTGAGGCCCCGGGGAAGGATCCTCAGAAACGAACAGAATCCTGGTCGCAGAACACATATAGCTACAAGTTATGAGACAGAATGGGAATTGAAGGAAGCAGAGAGACAGACCAGTTACACGGGCAGGAAAATCATCCCCGGGCAAAGACTGGAGTTGAACATGGACAGTTGGAAACGAGCCTCTGCGTCCAGGCGGTGTGCTGTGCGGTGGAGGGGCTGGTAACGCCCCGGGCACCCGCCGCCGTTTTACCTCTCCACCAGCCTCTGGCCACATCTCTCTCAGGTGGCACAGCCTACCTGGGCTTGCTGGAAGGTTCCACACTTCACTTGGCCCCGGGCATGAATATTTATGTCCTTTCTGCTCTCAACACTCCTCCTCTCCCCTTCCTTGCCCCCAACCTTGCTAACTAGCTTTCCACCTCTGGGCTTTATTAGGTATCTTTTCCTCCATGAGCCGTCAGATAAAAGGAGCACCTTCCTGTTTTCTCTGCTGGTTCCGAGTGGCTGACCTAGTTCTTCTCCTTGGTCCCCAG
Seq C2 exon
GTGACCGACCATGCCACCACCGCCCTGCTCCACTACCAGCTGCCCCAGATGCCTGACGTCGTGGTCCGCTCCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000382:ENSBTAT00000000493:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=FE(14.9=100)
A:
NA
C2:
PF115713=Med27=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development