BtaINT0091649 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27845200-27846646:-
Coord C1 exon
chr7:27846500-27846646
Coord A exon
chr7:27845335-27846499
Coord C2 exon
chr7:27845200-27845334
Length
1165 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TATTTCCTTTCTGTTTTCAGTCT
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTGTCCACTGTGACAGCGTGTGTGCTGAGGGGCGCTGGGGCCCCAACTGCTCCCTGCCCTGCTACTGTAAAAATGGGGCTTCCTGCTCCCCCGATGACGGCATCTGTGAGTGTGCACCAGGGTTCCGAGGCACCACTTGTCAGAGAA
Seq A exon
GTAAGTGTCTCGTTAGCCCGCACCTCCCGTCTTCCCTTCTCAGATCACCGTGTACACAATTGTGATCTCTCAGTTCATAGAGATGATCTGTTGCAGTCGAGGGCAGAGGAGTGGCATAGGTCATCCTGTCCTTTACAGAGCTGTCCTTGCTCCATAGCCCTGCCCCAAAGGCTTCATTTTTTCCATCCTTCAGGACTAACCTAACAGATGGGGCTCTAGCCATTTCTTCTCAGTAATGATTTCATTGCCTCATTGGCACCATCGTCAGTTTCCTGATCCTGCCTTAAACCTTGCAAATGGTGTTCCAGAAATCCATTGACCTGTAACTATTTTATTCAGCCGTTTTGGCATTGGCCTTACCTCAATTACCAGAAGTCAACATCAGCCAAACCTACCGGCAAATTATACATCCTGCTAGTAATCTGAAAGCCAGTGCTCTGGGGGAAAAGGATTGCAGAATTAAAAATGGGGACTGATGACATGGGTTAATAGAATTTTTGAGTTAGAGAGTATGAATCCATAAGATTTCCCTAGTCTTTTAGTAAATGTAATAAAAAATGAATATATGACTAATTATAAGATACATTATTCTATTTTTTAATGATTAGTTTTTGTACTAAGAGTTCTATGCTGTCTTTCTATACTTAAATACAAATAATGTCTTGTGAAGAACCTAATTATGAAGCATTTTGCTTTTTCACTTTTCAATCACAATCATTAACCTGAACCATTTTGAGGAGGGACAATCTTTTGATTCTGACTGTAGATCTATTTATTGCCAGTAATGACTCTTAAAGAATAAAGGATTAACATGTGAGTATTTATTTGGTCCTTGTTGGTATTTAGAATTTTCTTTCTCTCATTTATTTGCTCAATGAAAATTCTCCAGGCCCTTGCTCTATGCCAAGCTTCAAGCTAATTGGGGCCATAAATGGGAAAATAAAGAGAACTAAGACATTTGCTTGCCCTCAAGCAATTCAGAGTTTCCTAGCTTCTTTTCATTATTAAAAACTGCCCTTATTCCTTTTGTCGTTGATTTATGCTTGGAAAATTCTCAGTATCACTAAAAATAAATTTTTTTTATCCCAAACTTGAACCAGATCCTTATGTGGAATACAGGAGAAACATGTCTCAGGGAAGATAACTATTTCCTTTCTGTTTTCAG
Seq C2 exon
TCTGCTCCCCTGGTTTTTATGGGCATCGCTGCAGCCAGACGTGCCCGCAGTGTGTGCACAGCAGTGGGCCCTGCCACCACATCACAGGCCTGTGTGACTGCTTGCCTGGCTTCACAGGCGCCCTCTGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329:ENSBTAT00000000434:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0)
A:
NA
C2:
PF126612=hEGF=WD(100=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACTGTGACAGCGTGTG
R:
CAGAGGGCGCCTGTGAAG
Band lengths:
272-1437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]