RnoINT0091312 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52340834-52342249:+
Coord C1 exon
chr18:52340834-52340980
Coord A exon
chr18:52340981-52342114
Coord C2 exon
chr18:52342115-52342249
Length
1134 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTATGAGTTTCTATTTGCAGTCT
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTGTGCACTGTGACAGTGTGTGTGCTGAGGGACGCTGGGGTCCTAACTGCTCGCTGCCCTGCTACTGTAAAAATGGGGCTTCGTGTTCTCCCGATGATGGCATCTGTGAATGCGCACCCGGATTCCGAGGCACCACTTGCCAGAGAA
Seq A exon
GTAAGTGTCTCCTGAGTGATGGTTTCTACCCCTTCCCTTCCCTGGGAATTACGTACAAACCATCTCTGCCCCACCCCTTAGTTCCTAGTGACATTTTGTGTCAACCAAAGGGAGAGGAGTCCTTGAAGAACTGTCCTCAAATAACACTTCCCCAAGATTTTTACTCTTTTCAGCCTCCAAAACTAACCTAACAGATGGGCGTTAACCCTTTCTTCCTAGTGACTATTTCTTTACCTCATTGGCTCAATCATCAGGATACAGTTCTCACTTCCTCAGTGCAAATGGTGTTCCAGAAATCCACTGACCTGTAAACATTTTATTCGGCAATTTGGCAATAGCCTCACCTCAATTACCAGAAGTCAACATCAGCCAAACCTTGAGGCAATCGCACCCCTCACTAGGAATCTGAAAGTCAGTGCTGTGGGGAAAGCAGAACTGAAAGTTAAAAGTGGGGAGCATTGACGTCGCTCTGCAGAAACCTTGGACTAAGAAATGATCTGTAACATTTTGCTAAATCTTTCGGTAAACGTAATCAGGAAAGAACATGTGATCGGTTATAGCAGGCGCTGTTGTGATTTCTCAAATCAACTGCTTTTGCCATTAAAGAGTTCAATGCAATCATTCTATATATAAATCTAAACAAAGTCTTTGAAAACATTCAGACCCATAGCATTCTGTGTACTCATCCTTCTCTAATGTATTCACAGTTAACCTATACTATTTTTAAGGAGAAAGAACTTCAAACCTCATTTGGCTTATTAATTAATTAATTAATTAATTAATTCACTCATTCATTCATTCATTTTGCCAATCATGATTCTTGAAGAATAAAGGATCAAGGAGTTGCTTAATTGAGATATTGATATTTAGAGTTTTTTTTTCCTGTTTCCTTCTTTGTTCTACAAAATGTCTTCCAGCCCCTGATCTAGGGCCAGCCTTGAGCCAACCACAGGAAGATAGTGGTATATATGTGAGACATTCCCTTCTTCCCTTGTTAAAAGCTGCCTTCTTGTTTCATGCCTGAAAACTCCTCCATTATCATTGAGAGTCTTCTTATTCCTCAGTTTCACTAGACTTCTGTGTGGAACAGGCGGTAAACAAAACAGGAAGGTAACTATGAGTTTCTATTTGCAG
Seq C2 exon
TCTGCTCCCCGGGCTTTTATGGACACCGCTGTAGCCAGACATGCCCACAGTGTGTGCACAGCAGTGGACCATGCCACCACATCACAGGCCTGTGTGACTGCTTGCCTGGCTTCACTGGCGCCCTGTGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0)
A:
NA
C2:
PF126612=hEGF=WD(100=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGACAGTGTGTGTGCTG
R:
CACAGGGCGCCAGTGAAG
Band lengths:
268-1402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]