GgaINT1017720 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56253897-56257204:+
Coord C1 exon
chrZ:56253897-56254043
Coord A exon
chrZ:56254044-56257069
Coord C2 exon
chrZ:56257070-56257204
Length
3026 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
TTTGTCCTTTCTGATTCCAGTTT
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTATACACTGTGACAGTGTGTGCGCTGAGGGACAATGGGGACCAAATTGCTCACTGTCTTGTTACTGCAAAAATGGGGCGTCATGCTCTCCAGATGATGGAATCTGTGAGTGTGCACCAGGATACCGAGGCACCACCTGTCAGAGAA
Seq A exon
GTAAGGACAAAGCAAAACTTTCTATAACTAAAAGTGCACTGTAACTTCAGTTTCTTTCTCTCTCACATGGAATGAGTAAGATATAATACCTCATTAGCTGTGTTTATTGCACTAGGAAATACAGTGTAACAGTCCTCAATGGGATCTTCCAATTGTAAAAATGTATGGATGCACAGAAGGGTTATCTGAAATCAAAAAATCTTTCCAACTAGTAGTGCTCTTCTTTTTGTGGTATAACTGACACACCAGAAGACTGTGCTGCCGTTTAACAAAATCTGGGCAGGCTGGAGAGTTAGGTAGACAGGAGCCTGAGGTGGTTCATCAAGAGCAAGTGTGGGGTCCTGCACATGTGGATGAATAACCTCGCACATCTGTGTCGACTCAGGGCTGACCTGCTGAAGAGGAGCTCTGCAGAGAAGGACCTGGGGTTCCTGGTGGACAACAGATTGGCCATGAACCAATGGCCCAGAAGCCCAATGGAATCCTAGGCTGCATTAAAAAGAGTGTGGTCAGCAGGTCAAGGGAGATCATCCTCCCCCTCTACTCTGCCCTTGTGAGGCCACATCTGGAATACTGTGTCCAGTTCTTGGCTCTGCAGTTCAAGAAAGACAGGGAAATTCTAGAGAGAATTCAGCAGGGGGCCACAAAGATGGGTAAGGGCCTCAAGCGTCTCCCATATGAGGAAAGGCTGAGAGCCCTGTGACTGTTCAGCCTGGAGAAGAGAAGGCTGAAAGGGGATCTATCAATTTTTATATATATCTAATGATCAGGTGTCAAATGAATGGGGCCAAGCTCTTTTCAGTGGCGTGTGGAAATAGAAGAAGGGGCAGTGGGCACAAACTGGAACATAGGATGTTTCATACAAACATGGAAGAACTTTACTGTGAGGGTGACATAGCACTGCAACAGGCTGCCCAGAGAGGTTGTGGAGCCTCCTTCTCTGGAGATACTCAAGACCTGCCTAACTGCTTTCCTGTGCAACCTGCTGTAGGGAGCCTGCTCTAGCAGGGGATTGGACTTGATGATCTCCAGAGGTCCCAGCTAACACTTACAATTCTGTGATTCTGTGATACCTTTACTTTTATTCACATTTTGTGCAGTGACATTGTTATGTGCATGACTTTTTGAGAAACAAATAAGGTAGGAGCCTGGGCTCTAAGGTCAACATTTTCAAACATGATTGACAATTATTACTTTTATAATGCATTTTTGGGCAGGTAAATAAAACATCTGTGAGTTTCAGAAGCTCAAAACTTTAGCATCCCACTGAATCTGGGTGGAATCATTAGCTTAACTAGTGCTTTTTTAAGTTTTCATTTTGAAACAGTAGTAACTGGCCAATAGCATCAGGCATAAGTAAAGGATATCATAGACATGCATATTTGCATTTGAAAAATATGCTCCTATGAAATGTAAATGCTCCAAGAGAAGAGATGCAGATACAGTGAGGTACTTCATACCAGAATCAGGGAGGCAAAAATATGACATACAAGTATCTACCCCCAGGAAAATCTGTGACAGTTTTCTAGCAGCTTAGCTTTCTTTAGTTTACATAGTTTTAGTTCTATGTGAAAGGTGCTCAGAGCGGAGAAATGCAAGTCCTCTGCAAATGAAGATAGCTCTACTTTCACAGGGTCAAGAAGCAGGGGAAATAAGGCCAAGGAGTGATGCTACTAGGTCCTCTCCAAAAGAGGCGGAAAAGAAAGAAGGTGTCATGAAGTTAGTATTACCAAAAGTTAGGAGAACCAGAAGAAGATGAACACAAGTGGCAAGATTTCATGCTGAAGAATGTGTTTCCCTCTGATACTACCAAATCCCACATCAGTAGAGCATTAGTATTCCTTAAGCATTTCTAGTTACTCTCAGTAATTATTCTCACTATCTAATCTGTAGAGATCTTACAGTTAATCAGATAACCCAGAGGTAGAGTAAATATAAAACTACTTGTAGAAATATTCCTCGTGTTTTGGAACTATGCCTAAAACCAGGACAAACAGCTTCCCTGTCAGTGGCTCCCAGAGCCCTTCTCTGTTGCATGGTCTGGAGATTGGGAAGACAAAGGTCATATGAATAATTTGGATTACAATCAGGAAGTGTCTTTTCAGTAAACAGGAAGACCTTTTGGCTCTGTTTCACTTGGAAAAGTTAGTCTCTCTGGAGAGATCTGTCCACATAACTTGTATGAAGTGTATAACTGAAAGACTTGAAAGAATCTGAAATATTGAAAAGATTCTGAGTGAGTTTTTGTCAGTGCTGATTGCTGCCATGCAACAGTTATTTCTCTTGATGCATCACATAATATTATAATTTACCAGGAAAAAAAAAAAGGTGTAAAGGAGTTAGAGCAACAGAGGAAACAATTTCATGCAAAAGTCTTTTTTATTTTTCTTTATTTTTCTTTTTTAAAATAATTTTTATGTGCTTTTGGCTAGAGAATTAATAGAAGTCTGTATTTCTAATATCAAGTTCTATTACAATTAGCTGGTGTGCAGTTTGTCTGTACCATGTAATGAGTACAATGAATAACTAAGTGAAAGGATGACCAGAAAACATCGTACATTTTTCTCAGTGAAGTGATGGCGATTTGTCTATCAAGTTAGGAAATGTGGAAGTCAAGTTTTAAGATGATTGTACTCATCTGTTGATAAAACTAAATGTGTTTTTAAGGTACTTTTCTTTGAATATACATAAAAGGTTATTCACATTCATGTATGTAGAGAATATATCACATATGGCCAAATATGTATAATATATGAAATATATGTGCATTTCAGTCACAAGTGAAATGTGGCCTGACAAGTTATAGATTGTCTAATATATAGTTACTGACTAGAGCACAGTAAGCTCCTGAGAAAGATGAGAAAATCTTACATGAGGGCACAGCGCTGAGCTGTATGAATACTAACAACCACTGTTGCAACCCTTGCATATTTAGAAAGCAGAGCTAATTGGTAGTTAGGAACAAGTGCACTGAAGAACTGAAGAAAGTGCAGGAATCAATGATAGTTTGTCCTTTCTGATTCCAG
Seq C2 exon
TTTGTTCCCCTGGCTTTTATGGACACCGGTGCAGCCAGACATGTCCACAGTGTGTACACAGCAGTGGCCCCTGCCACCATATTACTGGATTATGTGACTGTTTACCTGGATTTACTGGAGCCCTGTGTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0)
A:
NA
C2:
PF126612=hEGF=WD(100=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]