BtaINT0091665 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27876052-27880255:-
Coord C1 exon
chr7:27880135-27880255
Coord A exon
chr7:27876189-27880134
Coord C2 exon
chr7:27876052-27876188
Length
3946 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CCAAGTCTCTTTGAATGCAGGGC
3' ss Score
3.5
Exon sequences
Seq C1 exon
CTGTGAGGATCTTTGTCCCCCTGGCAAGCATGGACCACAGTGTGAGCAGAGATGCCCCTGCCAGAACGGAGGCGTATGTCATCACGTCACTGGAGAGTGCTCTTGTCCTCCTGGTTGGCTG
Seq A exon
GTAAGCATCCCTCCCCACCTGCCAAAGACCCTTGTTCCAGGATACCTGAGTGAAAATGCATGGGGAGAACTTTAATACAAAAGAATGTCACATCAATGGATAAAAATTTCAAAATTGGAAATATCTGACCATTTCAAAGCAGGAATTTTTTAGTCCAGAGAAGGCAGAAGGTGATTAAATCCTGAACTTGAAGTTTACTGAGGGTTCTCATGGAAAAGTTAGTAGGCCATCTGTCCTGCATCTCCCTTCAGGATATAAAAGGGAAATATCTCGCCTTTCACATGACAACAAAAGCTGTTAATTACTGTAAGTATTCAAATAAGCATTTTCATAATTATGTTATATGGATCATTATTATTCTTTGGGAGCATTATTCTCAACAGGTTAAGTGTTGTGTGAAAAAGTTATTTGGTCTTTGAATCTGGAGACTCATTGAGGTCAATCAAGTTTTCCAAGTATTGAAGAACTCAGAGCCTTTAGTGTAATGATCTGTACCTTACTATACTTCCCAACTTTTGACTATGGTATTCTTTCTTTGTGTAGTATCTCACAGGCTTAATCTTATGTGGAATACCCAATGTCAAAGCTGGTTTACTAGGTAGATTAAAATCAGGCAATAATATTGGCTCATGTTTCTCTGAGTTGGTTTCTGTAAAAGTCTGCTTGAAGACAGGAGAGTGAATGACCAATGTCTGTTTCCTTCGTTAACATACAGAAAACAAAACAGCAGTTTACTTCATGACTACCTTCCATCTCCATGAGCTGTAGTGAAGTTGCTCTTGCAGGGGTACAAGTGATGTAATTACCAGATTCAATAACAATTCCTCCATCTTCATTCTACTTCATTCCTCCAAAGCTTTTGACTCTGTTGCTCATCTACCTCCCTTTCCTAATCTCTTTCTCCACTTCTCCCCTTCTCCTACCTCTCTTATTAAAGATCTCTTTTCCTAATCCCTCTTTTTTTATATACCATTTTATTTCCTGTGTTTCATGCCAGTCTTTCTCTTTTCTCACAATACATCTTTCCTGGAAATCTCATTAAGATCCATTGCTTTAACAATCATCAGCTGATTTTTCTCAGCCTTGACCTTCTCTGACCTGAACACAGATGTGTATTTGTCACTGTGCTGTTAGACTCTCCACCCTAGTTTCACCTAAAGACATGTGTCACTATCTGCCTGAACTATGCCTAGGCTGGAGCCTTAGGAGGCAGACATGGGATTGCCCTTGCTGTAGGAATAGAGCAAAGAAGACTTGGAGTCCACTTCCAGTCAGAATCATGGGAAGTAAGATTGGGTTCAAGATGGTAAGACCACTGGGAGAAGTGAAAAAGAAATGTAAGACCGAAGGCAAGAATTGGAAATAATAAGCAGACAAGACAAGGAAGCAGAGCCTGGAGAAACTCCATGGAGCAATAGAGTCAGTGCAAGGGGGCCTTTTATTGAGTGCCTGATGGTGAGGCAAATAGAGAAGCTATTGAAGAACTACTGACCTGGAAGCAGGCCTGTCAAAGTCAGTGTTCATAGAACCAAATTTGTCATACACCTAAACCTTTCTTAAGGTGATTCTCTTTTTACTTTTTTTTTTGTCTTCATGCAAACCAACACTTGTCTCTTAGTTGCCCAAAGTAGAAATGCTGAAATATCTTTGATTCCTTCTCTTCTTTTATTTCTTATAGTCAGCCTTTTGCAAACACTGGTCATTACTTAGTTCTTGGCAAGGGATGGATTTTGCTGAAGTAGTGGAGTGTCCAGGGAGCTCCATGTTCTTTGGATGAGGAGCCATAGAAAAATTACTTGCAGAATTTTTGTGTAGACATTGTCTGTAGAGTTGCCTCATCTTGAGGTTGAAGCCTTCTTCTTCTTCTGGGTTGGAGTGGTCATGAGGTAGGATGCTGGTGACCATGAGTTTGGACCGTGAGTCCCAGGAGGTGGACATATGGCCCTCTCCATCACCCAAGCAGAGCCTCCCGTATACTCTGCACCCCTACCCTGATGGATGTTTCTTACTGAATGTTTCAGGTTATTTTTCTCTAAGTGCAGCTGAGCTTCCAAGTTACACTTCTCTTTGCAGCATTTTATTTGGGCAGTAATCCTAAGTGCTTTTCATAGGTGGCTATGTATTCCTATTCCACATACACAAGTATATATTTCAACTAATAATGTCCTGTGTGCATACCAAGTCACTTCATTCGTATCGGGCTCTCTGCTACTGTATAGACTGTGGCCCACCAGGCTCCTCTCTCCATGGTTCTCCAGGCATGAATACTTGAGTGGGTTGCCCTGCCCTCCTCCAGGGGATCTTTCAGACCCAGGGGTCAAACCCATGTATCCTGTATCTCCTGCATTGGCAGGAGGGTTCTTTCTTTCTTTTTTTTTTTGTTTTTGGCAGGCAGCTTCTTTAGCACTAGAGCCACCTGGGAAGTCCAATAATATTCTACTTAAAGCTATTGACTCACATTAATCTTTCTTTGCAAACAGTATTTCAACAGCATCTCTAAAGCTTATGTGGGACCATTACAAAATGTAAGTAGTTCCTGAGAGAGTGAGAATTTTCACCAGAACCCTGGCTTACCATGGATTGACCCTTGGCATATTTATTTCATCTAGTCATGTTAATATGTTGTGCTAGAATGAGGGGTTAGAGCTATTTTTATATATGTCTCCCTCATCATATTGTGAGCTAATTAAAGGTTGTGACTTTATCTTTGATTCTCAGAGCTTAGCACGATGCCTGGCACATAGATGATTCTCACTTAAGCACTGATTTGAATCATCTCTCAAAGGCTTTTTCAGTTCCAAGATTCTGGAAGAACTTTTCTCATTGGTAGATAGCTAGAAACCACCAGAGGAGACTTAATTAGCACACCAACTGCCTTTGTGGGTAGCCAGAAGTTAGAGGAAATGCATTTTCTTATGCTATCCAGAATAAACATTTACAAAACCATCTGGTGTTCGCCAGCCTCCAATTTCAGAGTGCCCACAGTCTGTCTTTTTTTATAGAGAAGGAGGACAAAGCAACAGCTTCCAACAGTTAAAAACATTGTAAAAATCCCTGTTATTTGGGGTTATTTTGTTTGATGTAATAGTAACTCCAATACATGATAAACTACAAAGCCAAGTTATGTAGCCAAAGGAAGTAGAAAATAGTAGAGTATTCCATTGACTTATTGGTAAAGTATCTTATGCTTCTCTACATAGGGCTGGAATAAATATGACAATATCTGACAAGACAGACAGCCTCTAGGGTGAGAAGATGTGTCCAAGTTACTCTCTTGATTCCTCTCCCAGGAAATTAGTTTTCCTATTGATCTTGGCCCAGCAATGTTTGTTGAACCTGCTGAAAAGTAAAAGTGTCTTTTCTTCCAAAATAAAATGTCTAGAATTGTTTCTGTTGAAGTATTTCTTAGGCAATGTTAATGTTAATTCAGATACACAAAATGTCCATCCTTTTTCTAATGCTTGCTTATAAGAAATATAACCAACGATAAGGTGTATTTTCTCTAGAACATATGGTAAAGTATTTGAATATTCCATTTGGGCCAGATGTTATCATTTATGTAATGGATGCTCAATAAGTGCTGTTCACTTACTGTACATGTAAGACACAGGAAGAACACTTAGGAGGATTTCTAAATTCCTTAGGTTCCCATAATCATTTGAGGTGACTGTATTTTTTTTTTTTAACATAGGTATCTCTTATGATTACTATGCTGCCACCTATGCATGTATCTTGAGATTTAGGCTTACTAAGAAAATAAGTCAATTTAGAATTTCTAACATCTTTGAGGTGATAAACAGTTTATGTGTTCTAAAATCTCCTTTGTCTAATCTTTGTGCAGCCCCGTTCCCATACCCTGCCTTTCCTCTCTTTTCTCCCTTCTCTCTCTCTTTGACCCTTCCCCGACTGGAGGCCCATCTAATTTTCCAAGTCTCTTTGAATGCAG
Seq C2 exon
GGCACAGTGTGTGGTCAGCCTTGCCCCGAGGGTCGCTTTGGAAAGAACTGTTCGCAAGAATGTCAGTGCCATAATGGAGGGACCTGCGATGCTGCCACAGGCCAATGTCACTGCAGTCCCGGCTACACAGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329:ENSBTAT00000000434:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(7.7=2.4)
A:
NA
C2:
PF079748=EGF_2=PU(93.5=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]