RnoINT0091328 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52307456-52311248:+
Coord C1 exon
chr18:52307456-52307576
Coord A exon
chr18:52307577-52311111
Coord C2 exon
chr18:52311112-52311248
Length
3535 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CTAAGTCTCTTTGAATTCAGGGC
3' ss Score
4.93
Exon sequences
Seq C1 exon
CTGTGAGGATCTGTGTCCTCCTGGCAAACATGGCCCACAGTGTGAGCAGAGATGTCCCTGCCAAAATGGAGGCGTGTGCCATCATGTCACTGGAGAGTGCTCCTGCCCTTCTGGCTGGATG
Seq A exon
GTAAGTGTCCTTTCCACCCCCAAGAACCACACATCCCAGGACACAAAAGGGAACATCATATGGAGACACAAAAGCAAGTAGCAGTGGTGGCTGTGACTCCCACACTGTGAACACACAGCCATTTAAAAACAAATCTCCCTGTCCGGAGAAGCCAGGGGTAACTTCATCCATACTTGTCTGTAGAGCGTATTGAGAGCCCTCATGGGGTAAGCAGCAATAACCATGTATTGTGCACGTCCCCCAAAGAAGAAAAGAAGCACTTATCTGACCTCACAAAGGACAACAACCGATAAACACTGAAATTACTTAGTAACTGTCTTCACAATTCCATCCATAGATTACCACTGTCCGTGATAACATCCTCCTTCACAGGATGAGTGTCACGTGAAAACACTAGACTGTCATATAAATCTGAAGAAACACTGAAGTAAATCAAGCACATCAAGAATTGTAGAACTTTCCAGACAATGTAAGAATATGCCACGCTCAACAAAGCTCCCCAGACTTTGACCATAATGCCTTTCCTTTATGTAGGAATTCTATAGGCCTACTGCTATGTGGGGTACATTGTGTGAAAGCATCACACATGAAGCCGGGAACGAGAATTAGTTTTCATCTCTCTGAGTGGGCTTATGCATGTCTGTTTTAACATAGCAATACTCACGAGAGCAGTTTACACTGTCATCACCACGTCTGTCCAGGAACTCTTCTTGCACAGCCCCTAGGGACTTCTTGATTGTCAGATCCACTAGGACTCTTGTTTCTCCAGAGCTCTGACTCACTTGGTTGTCCACCTCTCTGTCTAAACCTTCTTTTGTCCTCTGCTTCATCAGTGGCCATCTCTCCCACTTCTCCCACTGAAGGGCTTTTCCTAAGCCATTTCTTCTATAGAAACTTCTCTCAGAGCCATCTGTTGCTTTCCTGGGATCTTCGTCTTACCTTCCCTGCGTGCAAGTGCAATTTGTAACTACCCTGCTGTTGCTCTGACCTTGGTCACCTATAGTCACAATGTTACTGATGTCTGGGCTTCATTTCACTTTCTACAGCCAAATGTGGGGTAGAATTTATCCGGAATTATTCTTTATTGTAAACAAAGGACATAGGTATGAACCTTAAGATATAATGGCGAGTTTTATGAAGACCACTGGGGCATATGTGCAATGAATTGATCAGACCCATGATGAAGGCTTGGCCAAAGTGTAGGAGCTAGGTAAGGAATGGAGTTAGGGGGTGCGGCCTTTTGTTGAGGGCCTCTGGGTTGTAGGAAACTGTGGAAGGATCACTGAGGTATTTCCATCAGGCCCAGCAGAGCAAATGTTAGGAAACTAAGCCTGCCAGATACACACACACACACACACACACACACACACACACACACACACACACACATACCTCAACCCCTTTGGATCTTAGTGCAAGTCACCATTTCTTAGAACCCCAAGTAGAAGTGTCTAGAAGGATTATCTTTGAATCCTTTTCTTCTCTCAATTCCTTTATTCAGCCTTCTGCTAATACTAGGCCTTGCTGGCTTCTTGGCAAGGGAACAGTCTTGCTACAGTGGCAGTGTCCAGGGAGCTCCAACATCGTCGGGTGAGGAACTGCAGGCAGTTCACTGCTAGGGTCTTCAGGTTGCCTCATCTTAAGGTGTCAATGTTTCTTCGATACTTAAAGGTTATGATATGAGAAAGTTATAGCCACAGCCTGGAACTATGAGTTCAGGAGGCAGACAAATGAGTCCACTCAGTAGGCCCCCGGAATCTTCCCTCAACCACTTCCTCTAGACCACAAGGGATGTTTCTTAATAGAAGCTTCCAGTCACCTTTTTTTCCTCTGTGGATAACTGAATTCCTAACACTCATTTCTCCTTTACAACACACTGTGGTTATTGTTGTGTTAGATGTCTCCAAAGGTCAATTGGCCTTCCTATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATCTGCCAATAGTACCATCATCATCATTCAACTGTTGGCTTACATTAGCTTTATTCAAACCCAACATTTCAACAGCATCCCTAGATGACGAGGGACCACTATGGGTTGCTAGAGTCAGACCCAGAAAAAGTGAGCACTTGCACCAGACCCCACCACATACCAAAACTTGGCCAGCTGTTCACTGACCCTTGGTCCATCATTCTCTCAGCAACGTTATTGTATTCCACCAAGTGCAGTAAGTGGGATGCACTCGCACAGAGTGATTGGAGCTATTTTTACATCTGCTCTCCTCACCACTCACAAACAAACCAGGTGACTTCTCTTTGACTCTCAGAGCTCAGCGCAGCGTCTGGCGTGCAGATGATTTTCAGTTAAAACACTAACCTGAATCAACTCTCAAAAGCCTTTATGGTTCCAATAGCCTGTGGAAGAATCTTTCCTGTTTGTGGATAGCTAGAAACCACCAGAGGGGACTTAATTAGCTCACCAACTGCCTTTGTGGGTAGCCAGTAGTTAGAGAAAATGTATTTCTTACGCTATCCAAAATAAACATTTAGAAAACCATCTGGTGTTCTAGCTAGGCTCCAATTTCAGAGTACACACAGTCTGTCCCTTTTGAAAGAGAGAGGACAATGAAAACACATTAGGGAAATCCCATTGTGTGGGGTGTGTTATCTGCACTAATTATGACTACAATAAATATTCTATTGATTATAACTCTAATAAATCAGAGGCCATAGGCCCAAGTTACAAGTTACATAGTAAAGTAGAAAACAGTGGAGTATCAATGATAGACTGAGGTCTTGGGGTCATGTCTTACTTTCACAGGCCCAGAATTGGAGTACACATGACTATGCTTGCTAAGGATAGCTCCCAGGGTAAGGAGAAATGTCCTGGTGACTTGTTTGGGTTTTCTCCTCAGGAAATAAGATTACCTCAGAAATGCTTATTGGGCTTGTCTTTTCTTCTGAAATAAAAGTTAAACCTTGCAGAGAAGTCTTTCTTGAGCTATGTTATTGTTAATTCAAGTACACAGTTTTAATCTCATGCCATATTAATATCACATCAGAATTACAGTATTTTATCATGTTAAGAAAAGAGCCCAGTGATAGTGTTAGCATCCAGGGAAACACTCAGATGCTCTGTGTGCAGCAGATGTTGCTACTTTCCCGTGAGCACTGTTGACTTAGGATGCAGGTAAGACACAGGGGAGACTACTTAGGGGGGTTATAGATTGCATTAATAACTTTATGTAACTTTAACTTAAGGTTCTTAAGGTTCAGTTTTCAATACAAAAATTTCTTAGAATTACTCTTCAGGTGTCTCTGAATGTAACTTAACATAAAGTCTCATTGAGTTAATGGGTCAGTCTGAAATTTCTCACGTTTTAAAGATGACGAACATTTTTGTGTTCTAGAATACCGGTAATCTAATTATCTTCCAGCCCTGTCCCCACGTCTCTCCCTCCCTTTCTGCTGTCCCTGTTTTCTTCCGTGATGCTGGCTGGTGGCCCATCTAATTTTCTAAGTCTCTTTGAATTCAG
Seq C2 exon
GGCACAGTGTGTGGTCAGCCCTGCCCCGAGGGTCGCTTTGGAAAGAACTGTTCCCAAGAATGTCAGTGCCACAATGGAGGAGCGTGTGATGCTGCCACAGGCCAATGTCACTGCAGCCCAGGATACACAGGGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(7.7=2.4)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(54.3=54.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]