BtaINT0091719 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50784127-50784715:+
Coord C1 exon
chr16:50784127-50784249
Coord A exon
chr16:50784250-50784577
Coord C2 exon
chr16:50784578-50784715
Length
328 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CCTGGTGGCTCTGGCCGCAGGGA
3' ss Score
7.07
Exon sequences
Seq C1 exon
ATGTGGATGAATGTGCCACGGGCCTGGCCCAGTGTGCACACGGCTGCCTCAACACGCACGGCTCCTTCAAGTGTGTGTGCAATGCGGGCTACGAGCTGGGTGCTGATGGCCGGCAGTGCTACC
Seq A exon
GTGAGTGGACAGTGGGCGACGGCACCACCGGGCGTGGAGATGCCACATGGCTCCCCAGGCCCCCACAGCTGTCGGCTCGCTTTGGCTGAGGGGCAGAACTTCCTTGTCAGTCGAGGGCGGCGTTGGGCCTGGGGGCTGACTGTGGGTCCTGGGAGGATGGGGGAGGACAGAGGGACCCCAGGAGGACAGGGTTCCAGGGTCCACTGAGCCCAGGAGCTCCGTGCAGCCTGTTTCCCAGTGGACTGGCAGCAGCTAGGGCGGGAGGACTGCGCCAGCTCGGGGTATCCCCCCAGCACTGATCCCACGTCCCTGGTGGCTCTGGCCGCAG
Seq C2 exon
GGATCGAGATGGAGATTGTGAACAGCTGTGAGGCAGACAACGGCGGCTGCTCCCACGGCTGCAGCCACAGCAGCGCGGGCCCCGTCTGCACCTGCCCCCATGGCTACGAGCTGGATGAGGACCAGAGGACGTGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAATGTGCCACGG
R:
CGATACACGTCCTCTGGTCCT
Band lengths:
261-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development