DreINT0014430 @ danRer10
Intron Retention
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41148264-41149230:-
Coord C1 exon
chr11:41149108-41149230
Coord A exon
chr11:41148402-41149107
Coord C2 exon
chr11:41148264-41148401
Length
706 bp
Sequences
Splice sites
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
3' ss Seq
TGTTTGTTTTTGTGGTTCAGGTA
3' ss Score
9.19
Exon sequences
Seq C1 exon
ACATTGATGAGTGTGCGTTGGGTCAGACGGACTGTGCTCATGGCTGTCGTAACACCAGAGGATCCTTCATGTGTGTGTGTTCTGCTGCCTATGAGCTCGGGGTGGACGGTAAACAGTGCTATC
Seq A exon
GTGAGTATGAGCTGAGAGACTCACATACACTGAAAAAAAAAAAAGATTCACTCGATTTACATATTTTTAATGTAAAAATGTCTGAATTTAAATATTGATGTTTGAATATTGATATTAATATTAAATGAGTTATACAATCATAATAATATTATATAATGCAAATATGCAATATTTAAAAAAAAATGCTGGAAACTATTAGCTCTAAACTGCATATACAATAAATTACAATGATTATAGAATTTATGTATTTAATAAAAATATTATAAATAATAATTTTGATTGTATTAGTTTTATATTGATACTAACCACTAATGACACATTTTTATTTATTATTTAAATTTTGATATTAATTAAAAATTATTAATACACAGTTGTATAATGTGTGTGTATGTATTGATTTTTTTGCATTGTAACATTAAATACAAGCTAAATCTCTTGTAAAGCAAGCACTATATATATATATATATATATATATATATATATATAATTAGTGAATTTAGTATATATATATATATATATATATAATATTATTTTTATATATATATATATATATTTACTAAATTCTTATATATAATATGCTTGTTTTAACTTAAAATTAGCTTGTATTTAATGTTACTATACAAAAAATTTTTAGCAGATAATATTGTACACTTAATTAAACAATTTAAGCCCTAATGCACTGCCTGTGTTTGTTTTTGTGGTTCAG
Seq C2 exon
GTATTGAGATGGAGATCGTGAACAGCTGTGATCATGATAATGGTGGTTGTTCTCATCACTGTGAACATTCGACCGCTGGTCCGCTGTGCAGCTGTAATGAAGGATATCAGCTGGACCACGACCACAAGACCTGCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808:ENSDART00000109204:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF126622=cEGF=PU(81.8=38.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATGAGTGTGCGTTGGGT
R:
CAGGTCTTGTGGTCGTGGTC
Band lengths:
254-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]