GgaINT0134958 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:984735-986936:+
Coord C1 exon
chr21:984735-984857
Coord A exon
chr21:984858-986798
Coord C2 exon
chr21:986799-986936
Length
1941 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TGATGGAATTCCTTCTGCAGGGA
3' ss Score
7.64
Exon sequences
Seq C1 exon
ATGTGGATGAGTGCTTGGCCGGCCTGGCCACGTGTGCACACCGCTGCCTGAACACCCACGGCTCCTTTATGTGTGCCTGCAACCCGGGCTATGAGCTGGGAGCGGACAGCAGGCAGTGCTACC
Seq A exon
GTGAGTACCGCAGTGGGATGGGGGGGTCTGTGGGTCAGAAGGGGGGAAGAGGAGTGGAGGGGTCCTGCTGATGGAGAGCACTTGGTACTGCCTGTTGAGAGCAGACCGAGTCACAGCACTGTGGGCCATGGTCAGAGCTGTCAGCTTCTCCCACCAGCAGAACTCATCCTCCTCTTCAAAGTCACCATCGCACTGGTTTAGATGGTTTACTTGGAGCTGTTTGGCTCCAATTGGGCCAAGTCTCACTCTTGCATTGGATGAGTTTGGTCAGTTGTAGACGTGTAACTGAAGGAGGAATTGAGCTAATGATGTGATCACATCTGCTCCCATCAGGAAGAGAAATAAATACAATCCAATGCAAGAGTGAGCCAGATTGCCATATGTTCAGCCAAAGCACATCAGCAGAGACGGCCTGAAGCAAAGCAGTTCAGAGCAATGCAAAGAGCTGCGTGCTATTCAGGAGCCAGAGCACTGCTGGCACCTCTCATTCCTAAGGGCACGGCTGATCCCACGCTGCATGTTTTGATGGACAAAATCCCACAGCTCGGTTTCGGTAGCCTCCACCTTTGCCTGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAATTTTACCCTAAATAAGCTTCATTAGCTAGGCTGGAGTTTACAAGAGCTTTGCCAAGCTATAAACACACATGGCTGCTATTGATGCTTGCCTCTTCCATTCGGACATGTCAGTCACTGCCTTTCCTAGCTGCAGGCATCTGGATGTTCGCAGCGCTCAGCTGCTCCCATTCCCAGCTGGCATCCAAAGCTCTGTGCTGGGAAGGCTGAGCCAACTCTGGCTGGCAGCACATCCTGCAGCTTGTCAGGAATGGGAGCAGCTCTGTGTGCAGTCTGGTTCAGCTCAGCTTGACCATGAGCCTGTCCCCGAGGGGCTCCACAGGGTTATTTTTGTGCAGCCCTTCCCAGCCCAGCATCTATTCCCATCCCTTCCCTGCAGCACAGCACTGCTCTGCTCAGCAGGGCCGTGTACCAAAAGCACCCACGAGGGGTGGGTGCCCGTGGCACTGGATGCTGATGGAATTCCTTCTGCAG
Seq C2 exon
GGATAGAAATGGAGATTGTGAGCAGCTGTGAGAGTGGCAACGGTGGCTGCTCCCATTTGTGCCACCACAGCAGCGCCGGCCCCATCTGCACCTGTAACTCAGGCTACCAGCTGCAGGATGACCAGAGGACATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAGTGCTTGGCC
R:
ATGTCCTCTGGTCATCCTGCA
Band lengths:
255-2196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]