BtaINT0092012 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47518159-47520232:+
Coord C1 exon
chr19:47518159-47518298
Coord A exon
chr19:47518299-47520125
Coord C2 exon
chr19:47520126-47520232
Length
1827 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CGTTCCCTGCTGCCCTTCAGGAT
3' ss Score
9.34
Exon sequences
Seq C1 exon
ACAAATTCGGCATATGACCCTTCTCGGTGTTTTGCCTTTGTTCATGATCTATGTGATGAAGATAAGAGTTACCCAATGCCTGAGAATAGTCTTGATGTCATCATCCTTATATTTGTTCTCTCAGCAATCGTTCCAGACAA
Seq A exon
GTAAGTTTTAAGTCCCTTAACCAGTAGCATAGCAAAAACAAAGCTTTGATCAGGGACCTTGATCTCAGAGTTGGAACCTTAATAAAAATGATTTTAATGTTCTGATAGACAGGAAGAAGCTATTTCATTCTAAGCGATAGAAGCTTGTCAACCACTTTTCTAAGTTTGTCTTGGAGTCCACGTTGGACTCCAAGCATCTAAACCTCTGCCTGTTGACTGCAGTGGTTGATTCTTCTTATGATAATGGTTTAACATCTCCAAAGAATGAGGGAGTCATCTTAGTGGGTATGTGGAGAAATTTCCTGTTAATGATCACATAGCATGGTATCTTAGAACTGTGAATGCCACAGCTATTCAAGAACATCTCATTATTGGCTTTTTAAATAAACCAGGCTTATTAACAGCACAAAATATACAGTGAAACTTAACTCATCAAGTGTTTTCTGATATTTAAGTTCTTTGGAAAACTTCTCTAGTAAGGAAAATTCCATAAAATCAAGATTAAAGGAAAGTGGATTGGTTTACCTTAAAAGATACCATTAAAGGCTCCTGGACATAGGCAGCCAGTCATCCCAATGAAGTTGAAATATTGTCTCAAGGAAGCGGCATCAGTCGGGGTGCTTTGGGGGGTGGGGTGTGATTGACTTTCTCTAGCCCACATTTCCTCTAGGATAGCACTGTGTCACTTGACCTGATAGGAATATTGTGAGTGTGAAATAAGGGCAGTGGAAGACAGCCCAAACAGCCTGGCATGGTTTTAAACATTAATTGCAGAAGCTTACATGCTGTAAATTTTATATAGTTTCACTTATTTATATATTGGCTGTACTGGGTCCTCATTGCTGCTCGCACTTTTCTCTAGTTTCACAGAGCAGGGACTACTCTGTAGTTGCAGTATACGGGCTTCTAATTGCAGTGACTTCTCTTGTTAGAAGAGGCACAGGCTCAATAGTTGAGGCGCGTAGGCTTGGATGCTTCGCAGCATGTGGGGTCTTCCAAAATCAGGGCTCAACCTCATGTCTCTTGCACTGGCAGGCGGATTCTTTACTGCTGAGCTACCAAGGAAGCCACCGAGTTTTAAACTGACATGGACTGAAACAAAACATTAAAATTAAAAACATTATTCAAAAAAAAATTTGTTATTCAGTATTTAATCAGACTTTCATGTGGTTTTTATAAGTTCAAAGCATTTATACTTCTTCAGTAGTTAAAGCTGAAACCTACGCTGAGACTCTATATATGGAAAATGCAGTCGGAAGTGTAGAGCACTCTGCCCAGAGTACTTATTTGCATACAGATTGTGTCACCTTGTAAAGTTCTTGAGATTCAGTCCTCATGTAACAGATGGAAATAGACAGGCTGCATTCAGAGATCTTGAGCCTAGTGGGCAGGTAGGTGGGTCAACTAGCAGTTTCCTCACTGGGTGGTCAAGGGTCCTCTCAGAGATCCATGGGAGCCCAGCGTGGGGATGACTTTCCCCTGAGGAGTGGGAAGTGAGCCAGAACGAGAGCATGTAACTTCCCGCACAGTGGATCCCTACTGAAGGAGCAGCCCTCTTCATACTGAAGGCAGTGGATAGAAGCCATGGTTGTAAGCAGACAGTAGAAGGTACATTAGAATTTGGGCGTGAGCTCAGGTTATAACTGAAACAAGAGCATAGGAGCTAAGATTTCAGGGCTGATGTGTCAGTGTTGGGAAGTTCACTGGCTTTTCCAAATAACGCTACAGAGAAAAGGGACCTGTTCTTTTTTGTGGGGGGTGGTGGGGGTGTTAGGAGGGGACTCTGTTCTTGAAGAGATCTGATCTTCGTTCCCTGCTGCCCTTCAG
Seq C2 exon
GATGCAGAATGCTATCAACAGGCTGAGCAGGCTTCTGAAGCCCGGGGGGATAATGCTTCTGCGAGATTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.5=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGCATATGACCCTTCTCG
R:
TTTAAACCGAAGCTGAGCCATGT
Band lengths:
238-2065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development