RnoINT0091770 @ rn6
Intron Retention
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93360361-93361075:+
Coord C1 exon
chr10:93360361-93360500
Coord A exon
chr10:93360501-93360968
Coord C2 exon
chr10:93360969-93361075
Length
468 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CATTCCCTGCTGCACTGCAGGAT
3' ss Score
7.04
Exon sequences
Seq C1 exon
ACAAATTCAGAATATGATCCTTCCCGCTGTTTTGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAATGCCCAAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCCGCAATTGTTCCAGACAA
Seq A exon
GTAAGTTTAAAGTCCCTTAACTAATAGCTTTACTATGATAAGGCTGTAATTGAAGACCTTAAACTCGGGTTATGCCCTAAATACAAAGGGTTTTGTTGTGTCTAGTAGACATAAAAAAGCCACACGACGATTGTATTGGTTTTGCTCTGCCATGGTGCCCCCTTGCTGAAGGCCTGTACACCAGTTTGGCTCCAAAACACAAGCCAAACCAACACAAGTCACGAGTGTGGCCATACATGCACTGTAATATCAGGGCTCCTAGAGAGCTACAGGAGTATGTGGCAAGGGATCACTGGGGCACCAAGAAGGGAGCTGGATTTAATACTTGGAATGTCCATCACCATGTAAGACGCAGGGGCTGGCTTTTAGTGAGGAAGTTAGGAAGTCGGTTGTCCTAGGGTTTATGCTATAGGAGCAGAGAAAGCCATCCCTAAGGAGACTTACACTTCATTCCCTGCTGCACTGCAG
Seq C2 exon
GATGCAGAAAGCTATCAGCAAGCTAAGCAGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131:ENSRNOT00000008140:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.5=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTCAGAATATGATCCTTCCCGCT
R:
AAACCGAAGCTGAGCCATGTC
Band lengths:
238-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]