GgaINT0143067 @ galGal4
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2340159-2342175:+
Coord C1 exon
chr27:2340159-2340298
Coord A exon
chr27:2340299-2342068
Coord C2 exon
chr27:2342069-2342175
Length
1770 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CCATCTTGTTCTTTCCTCAGGAT
3' ss Score
10.71
Exon sequences
Seq C1 exon
AGCAATGTGGAATATGATTCTTCTCGCTGCTTTGCATTTGTCCATGACCTCTGCAATGACCAAAGTCCTTTCCCAATGCCAGATGAAAGCCTTGACATTGTCATTCTCATCTTTGTCCTCTCAGCGATTCTCCCAGAGAA
Seq A exon
GTAAGTTTTAAAAATTCCTTCTGGGTCTAAAGAAAATATACACAGAACTGGAGGTCTTTATTAGGGAAACATAAAAAGAGCAGAGATGAAGAAAAAACTTTAATTGTTGAAGCCTTGCTGGTGCCAAGTGGGAAATACTCGTTATGCTGTTGTACCTTCTTCCATTTCATCCAGTTTAGCTAAGGCTTCTTAGTAATCTGTTATAGTTATACCTACGTATAACATAACCTACTTCAAAGGCTTAAAATTCCCGGGCTGTCTCTCTGTAATCTTAATGTGTCTCAAGTTCTTCATCTCCACAGCTTTACTACTTCATCTCTACAGTTCTACAGTGATGTCAAGGCCTAAAACAGCCTGCATTACTGATGTATTTTGAAGGTTGCACCTCTTCTGTGCACCAGCTAGCAATATATCAAGTAGGGCTCTTCTATTTCTTTCACTTTTTGCCAAGTGATCCCACCTCAAAATTGCCAAAAAAACCCAACTAAACTGACTGATAAATAACCTCACTGTGCTCTTTAGTGTTGCTGCATGAGATCCCCCTAGATCTTTAACTTAAGGAGACTGGTAGCTTTCTACATAATTAATTATTTAGTTTCAGCACTTGCTTGATAATACAGTGATCTGTGTGCTGTGCCATCCATATCTTTATGTAGATTAATCAACAGGAGAGAAAGGAAATATTCAATGATTTGACCACCTTTGTTATAAACATGGTGCAGAGAGGCTGTTAGCTGTTAAGTACCTGAATTATTGTTAGTATGAATTCTGCAAGAGCAGGAAAGAGAATCTTGTTAAATGAAACATGTCTACCTGCAGCAGAATATATAGGAGATATTTGATAGGTAGCAATAGACAATGAATAATGGGAAAATACTCTTGAATGCTTAGCAATGCTTAAAGATTAGGCTGATGGAGCTGAACCTGCAGTGGAATGTATGGAGATAACTTCTGCACTGGCTCCGCTGGTTTTGTCAGAAAGTTTTTGGGTGTTAATCTGTCCCAGCTTTTCTGGATACGTGTAAAGCTTCAAGGTAGGTTCCTTTACATCAAGGAAAATTAAAGCTGATTCTGTGACTGATCCAGTCTTCCATTAAGCTCTGGAAGTGGAATTTGCAGATACTTTAACAAATTCTGTTACAGGATGGGTGTAGTTTTGAAGTGTTGAATGGCTGTAGTTGTAGTCTTGCTGTGGTCACAGTTGCTCCTCTGTTCTGAACAGCAGCCACACCATGCAGTCAGCACTCATTTTTGGGAGGTACACTTCTGGACCGTTAGGTTCAAAGAGTATATGAATTTCGTATGTGTGAGATGGTGAAAAGGGAGGGTTCAGAGAACAGTTTAGAAAAGTACTGTGATCTTAGTGTGACAACGTGCTATGACCTAGCAGGATGGAACAACAGATGCAAATAAATGACTTTAAAAATTCTTGTTCTCCCTTTCTTATTCCTTTTGGTTTTATTTTTGCAGTGTTTTTTTTCTTCAAATTCACTTCTTGTTTGTTTTACAGAAACCACTGGAGCTATTATTGTAATTACTAAGAGCAATTAAAAAAGGCAGAATGGGCAACTATGGTTAAAAAAAAATGGTGACCAGATGAAGTCAACCCACCCCAGTCTGATAGAGCTCACAAAACTTCAAGTTTTGGTAGCTTTTTGTATGAAGTTGTAATATATGTGAAACTGACATACTTTCTTTTGGGAAAGTAGGCTAAACAAACAGGCTTGATTTTGCAGACTGCTGAGTACTGCCATCTTGTTCTTTCCTCAG
Seq C2 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.1=100),PF118993=DUF3419=PU(30.3=57.4)
A:
NA
C2:
PF134891=Methyltransf_23=FE(18.8=100),PF118993=DUF3419=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGTGGAATATGATTCTTCTCGC
R:
CTTTCTTGAACCGAAGCTGGG
Band lengths:
246-2016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]