GgaINT0143067 @ galGal3
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2246792-2248808:+
Coord C1 exon
chr27:2246792-2246931
Coord A exon
chr27:2246932-2248701
Coord C2 exon
chr27:2248702-2248808
Length
1770 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CCATCTTGTTCTTTCCTCAGGAT
3' ss Score
10.71
Exon sequences
Seq C1 exon
AGCAATGTGGAATATGATTCTTCTCGCTGCTTTGCATTTGTCCATGACCTCTGCAATGACCAAAGTCCTTTCCCAATGCCAGATGAAAGCCTTGACATTGTCATTCTCATCTTTGTCCTCTCAGCGATTCTCCCAGAGAA
Seq A exon
GTAAGTTTTAAAAATTCCTTCTGGGTCTAAAGAAAATATACACAGAACTGGAGGTCTTTATTAGGGAAACATAAAAAGAGCAGAGATGAAGAAAAAACTTTAATTGTTGAAGCCTTGCTGGTGCCAAGTGGGAAATACTCGTTATGCTGTTGTACCTTCTTCCATTTCATCCAGTTTAGCTAAGGCTTCTTAGTAATCTGTTATAGTTATACCTACGTATAACATAACCTACTTCAAAGGCTTAAAATTCCCGGGCTGTCTCTCTGTAATCTTAATGTGTCTCAAGTTCTTCATCTCCACAGCTTTACTACTTCATCTCTACAGTTCTACAGTGATGTCAAGGCCTAAAACAGCCTGCATTACTGATGTATTTTGAAGGTTGCACCTCTTCTGTGCACCAGCTAGCAATATATCAAGTAGGGCTCTTCTATTTCTTTCACTTTTTGCCAAGTGATCCCACCTCAAAATTGCCAAAAAAACCCAACTAAACTGACTGATAAATAACCTCACTGTGCTCTTTAGTGTTGCTGCATGAGATCCCCCTAGATCTTTAACTTAAGGAGACTGGTAGCTTTCTACATAATTAATTATTTAGTTTCAGCACTTGCTTGATAATACAGTGATCTGTGTGCTGTGCCATCCATATCTTTATGTAGATTAATCAACAGGAGAGAAAGGAAATATTCAATGATTTGACCACCTTTGTTATAAACATGGTGCAGAGAGGCTGTTAGCTGTTAAGTACCTGAATTATTGTTAGTATGAATTCTGCAAGAGCAGGAAAGAGAATCTTGTTAAATGAAACATGTCTACCTGCAGCAGAATATATAGGAGATATTTGATAGGTAGCAATAGACAATGAATAATGGGAAAATACTCTTGAATGCTTAGCAATGCTTAAAGATTAGGCTGATGGAGCTGAACCTGCAGTGGAATGTATGGAGATAACTTCTGCACTGGCTCCGCTGGTTTTGTCAGAAAGTTTTTGGGTGTTAATCTGTCCCAGCTTTTCTGGATACGTGTAAAGCTTCAAGGTAGGTTCCTTTACATCAAGGAAAATTAAAGCTGATTCTGTGACTGATCCAGTCTTCCATTAAGCTCTGGAAGTGGAATTTGCAGATACTTTAACAAATTCTGTTACAGGATGGGTGTAGTTTTGAAGTGTTGAATGGCTGTAGTTGTAGTCTTGCTGTGGTCACAGTTGCTCCTCTGTTCTGAACAGCAGCCACACCATGCAGTCAGCACTCATTTTTGGGAGGTACACTTCTGGACCGTTAGGTTCAAAGAGTATATGAATTTCGTATGTGTGAGATGGTGAAAAGGGAGGGTTCAGAGAACAGTTTAGAAAAGTACTGTGATCTTAGTGTGACAACGTGCTATGACCTAGCAGGATGGAACAACAGATGCAAATAAATGACTTTAAAAATTCTTGTTCTCCCTTTCTTATTCCTTTTGGTTTTATTTTTGCAGTGTTTTTTTTCTTCAAATTCACTTCTTGTTTGTTTTACAGAAACCACTGGAGCTATTATTGTAATTACTAAGAGCAATTAAAAAAGGCAGAATGGGCAACTATGGTTAAAAAAAAATGGTGACCAGATGAAGTCAACCCACCCCAGTCTGATAGAGCTCACAAAACTTCAAGTTTTGGTAGCTTTTTGTATGAAGTTGTAATATATGTGAAACTGACATACTTTCTTTTGGGAAAGTAGGCTAAACAAACAGGCTTGATTTTGCAGACTGCTGAGTACTGCCATCTTGTTCTTTCCTCAG
Seq C2 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.1=100),PF118993=DUF3419=PU(28.1=57.4)
A:
NA
C2:
PF082427=Methyltransf_12=PD(17.5=48.6),PF118993=DUF3419=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGTGGAATATGATTCTTCTCGC
R:
CTTTCTTGAACCGAAGCTGGG
Band lengths:
246-2016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]