MmuINT0098034 @ mm10
Intron Retention
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105132441-105135444:+
Coord C1 exon
chr11:105132441-105132580
Coord A exon
chr11:105132581-105135337
Coord C2 exon
chr11:105135338-105135444
Length
2757 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CATTCCCTGCTGCCCTCCAGGAT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ACAAATTCACAATATGATCCTTCTCGCTGTTATGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAGTGCCTGAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCAGCAATTGTTCCAGACAA
Seq A exon
GTAAGTTTAAGGTCCCTTAGCTAATAGCCTAACTAAGATAAAGCTGTAAGTGAAGACCTTGAACTCCAATTATGCCCTAAATACAAAGGGTTTTATTATGTCTAGTAGACATGAAAAGCCAAGAGACTGTTGTATTGATGTCCGCCTTTGTTTGAGCCTTTGACCCTCTGCCTGCTGACTGTGGACTGGTTCCTGCTTTCTTTGTTGGAAGCTAAGTCTGAAAACCCTGGGAAGATATCCACTTAGTCCACTCTCAGCACGTGCTGCTTCAGAGTCAAGATGGCTGTCTCATTACCAACCTTTTAAATGCTTGAAATAAGTCAAGATTCTTAACACCCTAAAATCTATAATGACTGTACTGTGTTTTCTGGTGTTAGGAAAACTGAAATACAGCCTTCCATAAAATCAGGTTGACATAAAGGGAATCCAAAGGCTGGGTGGTAGTAGTGTAAGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGCAATCTCTGAGATGGAGGACAGCCTGGTCTACAGAATGAATGAATCTCAGGACTACACAGAGAAACCCTATCTCAAAAAGACATGGGGAGCAGGGAACAGTTGGATTGCTCTACTGGAGAGCTGGCTCAGAGGTGAAGGGCGCCAGAGGACTGCAGTCTGCTTCCCAGCACCCACACCGTAGTTCACAGCCATCCATAACTCCAGGGTCAAGAGTTTCAACATCCACACTTGGCTTCCATGAGCACTGTATGCACATGATGTGCATGCACATAAATACCAATATATATAAAATAAGAACGCCTTTCTAAGATACAATTTTAAAATTTCATGTAGGGTCAATGAGATGGCTCAGCAGGTAAAGGAATTTCCACCAACATGAGATCAAGCCCAGGGTTGTGTGATGGAAAGAGGGAACTGACTCCCCCACATTCTTCTCTGACTTGTACATGTGATATGTGCACGCACCCCACACACACATCACAGTAACTAATTTAACATATTTTTGTAAGTTCATGTGCAGGCATCTGGTGATAGGGTTTAGTATGTGTTTAGCTTGAGTTCCTAAGGGTGTGCCTCAGAGGTCAATGTGCTTCACACGTACAGGTCCCTGGGTTCAATCCCTAAACCAAGAAAGAGAAGGAAGGATAGAAGTATGCCCTGGGGTCTCAGTGATGCAGGAGGCTGAGGCAGGAGTTAGCCCTGGAGTTCAGGGGCAACCTAGGCAACGAAGCCAAAGCCCAGCTCCAAAAACAAAACGCCTGTGTTAATCAGACTGCTGCAATCCTGTGAAACTGCTCACTTGGAAGTAGAGTCAGTTGTGAGAGCCTTTGACACAGCCTACTGAGCTAGCCATCTTCCTCTAGATTAGCAGTAACGTCTCTGGCCCAGTAGTATATGAGGCTTTGAAACATTTTGTGTAGACTGTATTCTTCAGGTGCTGTAAGTACCTAATCCTGTGTCAGACTTTTGGAGAGTGCTACATGAGCATTTACTTAGAAAGAGAAAAGGTTATTTTGGCTTGTTTTGTTTTGAAACACTGCTTTTAGGCCTTCAGCAAGGGGGCATATCACGACAGAGCAAAACCTCTCATTCCACAGTCAGAGTAAAAAGAGAGGAAGGGGAAGGGGACGGAATCTCCCTGTTCCTTACCAGGGCACCCACACATGCTTCCCAGTGACCTAAAGGTCCGGACCTTTGAGTTTCTACCACCCTCTAGTAGCTCAAAGAAGAGCCATGCTTTTAACATGTGGCCTCTGGGGAAAAGCAGGGGACAGGTGGGAAGCCCCCTGGCAGTGCTCACCTGCCTGCTGCATGCAGCACCATGTAAGCTGGGGCTTTTTATGTGTACAGTTTTTTAGATTGTTTTTCTTTTTGGTTTTTAGACCTGAGCTGGCCTCTGACTCAAAGTCCTCCTGCCTCAACCCCCCTGTAACTGTGAGCTTTCTCACCCACACATAAATTCCCCAAAATAATGACCCTAGACTTCTATATATGAATAAATGCTGAGGCCCATAGCTTTGGCTCTGTTCCCTGACTGGCCCGTATCTTAATTACCCATTTATTTTATTCTGTATTCTGTTACCTGGCTGGTTACTTGGTCCTCAGTTTCTCATGACTGTCTTTTTCTCTGTCACGGAGCAAATCTTCCTCATGCCTGTCTCTGTCCTATAAATTCAGTCTCTTTGTGCCAGATTCCCAAATTCTAATCCTTCCTAACCCTTCCCCAGCTCAGTGGCCAAAGGTTTTTTTCCTAACAGGTGGAACTTGCGTACATTGCACAAAAGATTCCTCTGCACCTTCTGAGTGCTGAGATTGCAGGCTCGTGCCATCACACCTGCAGCGTTATCTTCACAGTTGAAGGAGTTTGGGTGTGATCGATGTGTGGGTGCCCTGGAAGGGGACAGTGGCCTTCCTCTTCCTTTCTGTTTACCCTGATCATGGAATGAGAGGTTTTGCTCTGGCCGTGATGAAGACCTAAACACCAACTTCTCTCCAAAACACAAGCCAAAATAAGACAAGTCATGAGTATGGCCATACATACACTATATGTTCAGGGCTCTTAGAGAGCTACAGGAACCTGTTGCAAGGGTGGCGATCACAGGACCAGCAGGAAGTGAGTCAGGTTTAATACTTGGAATGTCCACCACCAGGTAGGACATCAGGGCTGGCTTTTAGTGTCAGAGTTAGGAAGTCTGTTGTCCGGGGGTTTGCTATAGGAGGGGACGCCATCCCTAAGGAGACTTACACTTCATTCCCTGCTGCCCTCCAG
Seq C2 exon
GATGCAGAAAGCGATCAGCAAGCTAAGCCGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAACTTCGGTTTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691:ENSMUST00000021030:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.6=100)
A:
NA
C2:
PF082427=Methyltransf_12=PD(17.3=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types