BtaINT0093717 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39939668-39940283:+
Coord C1 exon
chr19:39939668-39939747
Coord A exon
chr19:39939748-39940228
Coord C2 exon
chr19:39940229-39940283
Length
481 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GTGCCCCCTTGTATTGGCAGAGG
3' ss Score
6.39
Exon sequences
Seq C1 exon
CTTGCTATGGCATCGTCCAGGTGCCAACAGGACCCTGGTTCTGCCGGAAATGTGAATCTCAGGAGCGAGCAGCCAGGGTG
Seq A exon
GTGAGTTTGAAACTTCCCTCTCCTCTCATAAACACCTGAGCATCCCCTCCCTTGCCAGTGAGCTGGGGGGCTCTGAGGCTGAGGCTGGGGTGGGAGTGTCACACAGGACTTCCTGTTTCCTGCACACCTCTATCACCAACCCCATCTCTCCCTCTGCTTAGCCCTCACTCTGCCCCACCACAGGCGCCGGGTCTTCTGTTTTTGTTTTCTTGTTTGTTTGAGCTTTTTATCATGGAGAGTTTCCAACCTATACAAAAGTAGAGGGAATACTATAATTCTCCTGTTGATGAGGCTCCCCCATCTTTGACAACTATCACTCACGTTCAGCCTGTTTTCTCTGTATCCCCACCAGTTCCCCCTTAGACATCTAATCATTACATCCTGGGGCTCTCTGAATGTATTCAGGGAGGGCTCAGCTCAGTAGACCCCCCCTTTTGGAAAAGCCCATCCCCCAAATCCCTGTGCCCCCTTGTATTGGCAG
Seq C2 exon
AGGTGTGAGCTGTGCCCACACAAAGACGGGGCATTGAAGAGGACCGACAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532:ENSBTAT00000015325:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development