GgaINT0143410 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3971094-3975619:+
Coord C1 exon
chr27:3971094-3971173
Coord A exon
chr27:3971174-3975564
Coord C2 exon
chr27:3975565-3975619
Length
4391 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGTTTCTGCTTAATTTCAAGAGA
3' ss Score
4.9
Exon sequences
Seq C1 exon
CTTGCTATGGGATCGTCCAGGTTCCTACTGGGCCGTGGTTCTGTAGGAAGTGTGAATCTCAAGAGAGAGCCGCCAGGGTG
Seq A exon
GTGAGTACAGAGCCCAAGTGTTCCTATGGGGAGCAGACCTGGGCAGGGCCCTTCATGCCACAGCCCTGACCGAGGGATCCCAGCCCTGCCCATACCCTGCAGTGTGACGTTAAGCACGGAATTCACCCCGAGGGACCAAATCTTTCCCTTCATTTCTTATTCGTGCAACAGGAGGAATTATGTCAGAGGGTTCTCTAACCCGTCTCAATGAGAGCGCTGCCAAAGGAGCTTGTAAGCCAAGCTGACAGCGAGAAAAACGTTTGGATCTGGAGACCTCAGACGTAATGGTGCGCTTGGAAACGGCTGTGGCTGCTCTGTGCAGCTCCTCAGAAAGTTTTGCAGTGCTGGAGAGTTGCCATCACCTGAGACACTGCTGCACGGGCTGGCATTTCTATCTTGCTTGCAGCAATGGTCTCCTGCAGGAGGGGTTTGTTGCATAGAGGAAGGAAGTGCCAGGATGCTGGACCAGGGCTTTGTTTCTGCCTAAGTTGCGATTTAGCTGCACGCAACACTTTGCAAATGCTCTTAATTAATCCTGGCGTTTCCTGGTGAGGCAGAGAAGTGGAACCCATTGGGCCAGGAGTGCCCCTGAGGTCCGTCTGTGGGGCAGCTATTGGTGTGGGCTGTGAGGTTATAGCACAGCAGCTCCTTGCAGTGCCTGCCCGTGTGAGCCCTCATCAGACAGGGCTGCACCAGCTGCTGCTGAGGGCCGGGCTGTGGATCTGTGATGTGTCAGCTGGAGTGGAGACGTTGCCTCTGCTCTGCCCTAAATCCAAGGTAGTTCCCCGCTTCGCTTCCTTCCAAGTGGGTTTGGATTAAACCGTGGCCTTTCTCAGACACAGAAGGGCTCAGCTGGGATGGTCAGCACTGGCGGATGCTCGCGCTGCCTTCTGAGCTGGTTCAGCTCATTTCTGGGTGAAGCCAACAGAGGGGATCCGTGCAGATGTGCGCTCCACCCCAGCTGCGCTCCGCTCCCTGCAGGACAGAAGTGTAATCTGCTCCACAGATGGGCGAAGAACTTGGCAAGGATGGGCGGATGGGGGAAGTAGGTATCTGTGCCATGCATCCTACATGGCAGTAACTCATTCCTCGTTGGAAGGGGGAGTGTAAACAAGACCAGACTTTCAGACCTGAGCTCTCCTCCCTTTGTGAGACGCCGCTTTTATGTGTGTGGCAGTAAAGAGGATCAAATGTGTCTCTGAGCAGCTTTACATCCTGCAGATCGTTTCAGAGCAAAGAAAGGAATTTGGGCTTCGTGAGCCTCCTCCCCCCCCCTCTCCCAGGCAAAGAGAAGCCCTCCAGTGGAGCATCAATGCAACCCATAGTAGTGCGTGTGCGCACAGCTCCTCCTCACCTGCGCCCATCACAAGGGTTCTCACTTTCCCTTTGTGCTTCAGGCACTTCCAACTGCTTCCAAGGTGGCAAGCAAACATCACCCCCACAGGTGGCTGCTTATTTAGCTCACCCTCACTGAAATCCGTTGGACTCTGCATGGTGGGCTTCAGTCACACCCTTCCATCCCGCAGCATTCAGCCCTGCTGCTCTGATAACCGAGTGGTGATAATCTTCCTTCCCAAGCAGAGCTGGGGGCAGCTTCCTATCCAAATCCTTCACCTTTCCAGTCATGGCAACAGATGTGCAGATGGGTAAATGCATGAAAAGAGCCTTCTTTGATGTAGTGTGATCAGAGTGAAGGAAAGGAGTCAGGTCCCGGGCGATGCGCACAGCTCTGCTGCTGCGGTGCCATCGGATGCGTGCTCCGTGGTGCAGCACTGCCGTGGGTATCCCTGCATCTCTGCTGCACTGCTGCCCGCCTGCAGACACTGCCCTCAGAGGATCGCTGCTTCCTGAGAGCAAAACCCACTGCCAGCAGCGGGACGAATTGAGATTTGTGTTTCCTTCATTGCAAACCCCTTTGGAAAACAGCAGTGCCTTTCTTCTCCGCCTGCCTCCGCAGATAAAGCTTGTAACCAGCTCTGAGGTTCCACAAGCGTGTGCATTGCCTAAATATTGATACCTCTGCTTTGAAAGCAAGATAGGAAGGTGCAGAGGGTGCTGCTCTTTGTGGTTTCTGTGTCTGTCCTTTAGAGGGGGTCCATCTCCTCTTTGGCTTTGGATGGAGCTCAGTGCCCTGACCGCAATGGGATGCTCCCATGGCTCTGCGTCCATAGCCCTGGCGTGGGGGGGGAGCAGGGGGTGGTCAGGAGCTCCAACGTTGGTTTTAATCAGCCAACCCTGCTCTTTTCCCAGAGAATTAAAGTAAAAACCCCGAAGGCTGCACAGGTTGAGTGAAAAGAGGAGGCACCGTTAATCCCTGCCCGCATCCCGGCTCAGATGCGCGGGTCCCTAAAGGATGCAGCCGATGCTGCTTTGTGCTTACCGTAAGCAGCTCAAACCCATCCACTTTGTAATCAAATTGTCTGGCGAGCCCGGTGAGCTGCGATGGCCAGAGGGCACTCATGTGAGGGATCATGTGAAGGCTTTAGCTGTCATTTAGAGGCAGGGCTATTAAAAGTCTTGTGTGGGGCCGATGGAGCTGTTAACCCCTCTTGTTACAATCAGAGCTTTGCTAATCGCGTGGTGGGAGAGCCGCTTTGATCCGAGGGGTGGAGGGGAGAGCGGAGGGGCCTTTTCAAGTGCAAATTTCTTATTACAGTGTCTCAGTTCACCCAGTTCTTTTTTTTCCCCTGTCTTGGCTTTCCATGCTAATTGTGAGAGCCTCTCCGTCAGTCGGGACCCAAGCAGCAGCAATGTGAACCACGTGTTCCAAGCAGAGTTGCAGGGAAAGTGAGGTGGGCACTGGTTTTTGTCCCCTCATCACTTATCTGTGCGTTGTGGTGGGGATTTGAGGGCTGGGATGAGCCTCCCTGCTGCCCGCAGCACTGCAGTCCCATCGGTTGTGTCTGAACGTCAGCAGGAGGAGCAATGAGCTCCAGGAGGGTGCCCACCTCTATGGAGGGTCTTTGGGGATGGGTGCAGATGCCCACCTCTATATAAGGTGTTTGGGGATGGGTGAGGATGCTCACCTCTATGGAAGCTCTTTGGGGATGGGTGAGGGTGCCCACCTCTGTATGAGGTCTTTGGGGATGGGTGAGGGTGCCCACCTCTATATGAGGTCTTTGGGGATGGGTGAGGATGCCCACCTCCATGGAAGGTGTTTGGGGATGAGTGAGGATGCTCACCTCTATATAAGGTGTTTGGGGATGGGTGCGGATGCCCACATCTATGGAAGGTGTTTGGGGATGGGTGAGGATGCCCACCTCTATGGAAGGTGTTTGGGGATGGGTGAAGGTGCCCACCTCTATATGAGGTCTTTGGGGATGGGTGAGGATGCTCACCTCTATGAAAGGTGTTTGGGGATGGGTGAGGATGCCCACCTCTATGGAAGGTCTTTGGGGATGGGTGCGGATGTCCACCTCTATGAAAGGTGTTTGGGGATGGGTGAGGGTGCTCACCTCTATATAAGGTGTTTGGGGATGGGTGAGGATGCTCACCTCTATATAAGGTGTTTGGGGATGGGTGAGGATGCCCACATTTGTGGGATGTGCTCAGGTGTGTCTGAGCAGCAGTACTTGTGCTGGAGGGCCGCCCTTGATGAGTGCTTCTCATGGCACAGTGCTCCTAGCAGTGCAGCCACCGTCCCTCTGCAATGCCTGGCAGCTCAGTTCAAAACTTTCTGGTGAAGCACAGAAAATAATCACCATTATTGGTGTGTTTTTTTAATAAGTATTCTTCTTATATTTTTTTTCTTACAAATCTGGTATTTCTGCTAAGGAAGGAGAAGGGCTGAGCATACCAGGGCTGGGGGAGGGTCCCCTGTGGTTGCCAGCGTGCCCCCAAACCAGCCCAGTGCACATCTGCATGTGGAAACTGAGGGTCCAAAGCAGGCAGCAGTGAGCAGTGCTGGGCTATGGGGCTGGGCAGTCTGTGGCCCCCAATGCCCAGCTGTTGGAAGTGTTACAACAGCCCCGGTCACGAGACTGGCTGGAAAAAAAGAAACATATCACAAGAGAAAGAGAAAAGGAAGGAAAGGGGCAAAGATAGATAATGGCTTCTGCTTATTTGCCTTTTGCTCTCTGAGTCACAGCTTTCAGTTTTACTCCACGACCACAAGGACCAAAACTGCTTTTTAAAAAGCCCCATGAAAGTCAAGAGCTGCCTGTGGCCCCCAGGTTGGGTCTCAAACGTGTCCATGTCACACAGTCTGACACAGCTCAGTGTCTTCTTGTACCCACACCACCCTCAGCCCTCCTTCCACTTCCTCTCCTTGAAAGCAGCCCCATCTTTCAGAAGCACTTTCTGAACCAACCACCCCTCTCCCAGCCCTGTGCCCCACGGCGGTGGTGGTGGTGGGGGTCAGATTAAACTTGTTGTTTCTGCTTAATTTCAAG
Seq C2 exon
AGATGTGAACTGTGCCCCCACAAAGATGGAGCCCTGAAACGGACCGACAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]