MmuINT0099399 @ mm9
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97526269-97526854:+
Coord C1 exon
chr11:97526269-97526348
Coord A exon
chr11:97526349-97526799
Coord C2 exon
chr11:97526800-97526854
Length
451 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGTGCTCCTTGCATTGGCAGAGG
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTTGCTATGGCATCGTCCAGGTGCCAACAGGACCCTGGTTCTGCAGGAAATGTGAATCTCAGGAGCGTGCAGCCAGGGTG
Seq A exon
GTGAGTCCAGCCCCTCTCCCTTTCCTCTCCCCTACACCTGAGCATCTCCTGCAGGTTAATAGGGTACCCTGAGGCTGGGGCAGGACTAAGCTCTGTCACTCAGGATTTCCTGTTTGCTGCTGCCTATCACCAGCCCCATCTCTCCCTCAGCTCTGCACTCAGCTCTGCCCCGCCTCACCTCCGGCTTGGGGGCTTTGATTTTTTTGGGGGGGGTGTCTATGTGCTGCTTTGTAACTTTTTACTATGAAAGGTTTTCAAGGCTATGGAAGTTGAGGGGCCGCTGTAGTGACCAGCAGGTTCTCCTTATTCAGCCTTCAGCAGTTAGGAGCCTCTTTGCTCTACAGCCTCAGCCCCCACCCAGATCTTATGTTATCTTCGGGCCTTTTGGATGAGTTCAGGGAGGGCCCAGCTCAGCAGATCCCCCCAATCCCTGTGCTCCTTGCATTGGCAG
Seq C2 exon
AGGTGTGAGCTGTGCCCGCACAAAGATGGGGCATTGAAGAGGACTGACAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437-Mllt6:NM_139311:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: