BtaINT0093720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39941605-39942058:+
Coord C1 exon
chr19:39941605-39941708
Coord A exon
chr19:39941709-39941964
Coord C2 exon
chr19:39941965-39942058
Length
256 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
GGCTGACCTCTCTTGATTAGTGC
3' ss Score
4.4
Exon sequences
Seq C1 exon
ACATGTTACATCTGTGAGGAGCAGGGCCGGGAGAGCAAGGCGGCTTCAGGAGCCTGTATGACCTGTAACCGCCATGGATGTCGACAAGCTTTCCATGTTACCTG
Seq A exon
GTGAGACCCCTGCCTTTCCTGCGTCCACTCCTTAGGGTTCTCTGGGATCCCTGGCCAGCTATCCCAACCTTCTCCTGAGATTTGCCATGGATGGCTGCCAAATGGGTTCATCCCAGCTGCTGTCTCTTTGGAGATAATGGCAGTACTTCCCTTGGGTGGTCTTGGCTTTGCCCCAGTAGGGGTCTTGGAGGGTGCAGGGGAGGTGGCCGGTCTGGTTTGGGACCACATCCTTCTCAGGCTGACCTCTCTTGATTAG
Seq C2 exon
TGCCCAAATGGCAGGCCTGCTGTGTGAGGAAGAAGTACTGGAGGTTGACAATGTCAAGTACTGTGGCTATTGCAAATACCACTTCAGCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532:ENSBTAT00000015325:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTACATCTGTGAGGAGCA
R:
TCTTGCTGAAGTGGTATTTGCA
Band lengths:
196-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development