GgaINT0143413 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3977168-3978072:+
Coord C1 exon
chr27:3977168-3977271
Coord A exon
chr27:3977272-3977978
Coord C2 exon
chr27:3977979-3978072
Length
707 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTGATTGCATGTATTCCAGTGC
3' ss Score
5.55
Exon sequences
Seq C1 exon
ACCTGCTACATCTGCGAGGAGCAGGGCAGGGAGAGCAAGGCAGCCTCTGGAGCGTGCATGGCGTGCAACCGGCACGGCTGCCGGCAAGCTTTCCACGTCACCTG
Seq A exon
GTGAGCTCCATCCCCTCTGCATCAGTCCCAGCTGCTGGTTTTGGGGCTGCAGCACACAGCGGTGTGCAGGGCTTGGGGCAAATCTCCCCCCCCCCCCTCCAGTGTGTGTGTTCTGTGTGAGGGGTATCTCACCCGTGCTCTGTTTGCAAGGGGAACTTCCTAACCCTAAGGTCAGAAGGCTGAGGTTTCAGCAAAGCCTTCCCCTATGAGAACGAAGGCTGGGGATTTCCCTAGGACTGTGTGGAATCCAAGGAGAGGAGGGATGAGTCATAAGCCAGGAATGTTCCTTTTCCAGCCCAGCACATACAGGAGCATCATCTAGATGATGTGATGTTAAGGGCTGATATCCTCCTGTACCCCTGCAGCCTGAAAGCAGCGTTGCCCATCAGCAGAACGTGGGGATTCCCAGCTTGGTGCAGATGTTCCTCGTGTGCCTTCTGCTGGAACTGCTGCTGCTCCCTTAAGAGAAGCAAAAATTGCTCAGCAGTTTGGTAGAAAAAGAAGTGGCAGTTTTAAAGGTCTTCATATGGATTGAAAACAGTCTGAGCTCTGCTCCCCCATCCACTTCCCCATAAACCATTAGCCCAGCTACACGGGAGGCTTCATGACCTTCCCTGGGTACCCTGAACTGTTGTTTGCCCGTTTATGAGGTATGATGTCAGGCTGTGTAATGGCTGTTATCCTCCTCCTGATTGCATGTATTCCAG
Seq C2 exon
TGCCCAGATGGCCGGCCTCCTGTGTGAGGAGGAAGTCCTGGAAGTTGACAATGTCAAGTATTGCGGCTACTGCAAGTACCACTTCAATAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(55.7=100)
A:
NA
C2:
PF137711=zf-HC5HC2H=PD(35.4=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTACATCTGCGAGGAG
R:
CATCTTATTGAAGTGGTACTTGCAGT
Band lengths:
198-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]