MmuINT0099402 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97666790-97667168:+
Coord C1 exon
chr11:97666790-97666893
Coord A exon
chr11:97666894-97667074
Coord C2 exon
chr11:97667075-97667168
Length
181 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TCTGACCCACTTCTCCTCAGTGC
3' ss Score
7.17
Exon sequences
Seq C1 exon
ACCTGTTACATCTGTGAGGAACAGGGCCGGGAGAGCAAAGCTGCCTCGGGAGCCTGCATGACCTGTAACCGCCACGGATGCCGACAAGCTTTCCATGTCACCTG
Seq A exon
GTGAGATCTCAGAGCCCGGCTGCTGGGAGGTTCAAGGTGGCCACCGAGTGGGAGCATCCTACCTCCTGTCTCGTGCGAGACGGCAGCCACGCCATGCTTAGGTCTTGGGTCCAGGAGGAAGGAGGTGGGGGGCTGCTGTGGTTTGTTTGTGGCTGCACCCTTCTGACCCACTTCTCCTCAG
Seq C2 exon
TGCCCAGATGGCTGGCCTGCTGTGTGAGGAAGAAGTCCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTACATCTGTGAGGAACA
R:
TCTTGCTGAAGTGGTATTTGCAGT
Band lengths:
196-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types