RnoINT0092956 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85609953-85610329:+
Coord C1 exon
chr10:85609953-85610056
Coord A exon
chr10:85610057-85610235
Coord C2 exon
chr10:85610236-85610329
Length
179 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTGACCTCCCTCTCCTCAGTGC
3' ss Score
9.9
Exon sequences
Seq C1 exon
ACCTGTTACATCTGTGAGGAACAGGGCCGGGAAAGCAAGGCCGCGTCAGGAGCCTGCATGACCTGTAACCGTCATGGATGCCGACAAGCTTTCCATGTCACCTG
Seq A exon
GTGAGTGAGATCCCTGGGCCCAACTGCTCTGGGGTCTGAGGAGGCAGCTGAGTGGGAGCATCCTAACCACTGTCTCCTGAGAGACGGTAGCAGTGCCATGCTCAGATCTTGGGTCTAGGAGGAAGGAGGCGGGGGCTGCTGTGCTTTGTGCTACACCCTTCTGACCTCCCTCTCCTCAG
Seq C2 exon
TGCCCAGATGGCAGGCCTGCTGTGTGAGGAGGAAGTGCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137711=zf-HC5HC2H=FE(43.0=100)
A:
NA
C2:
PF137711=zf-HC5HC2H=PD(35.4=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTACATCTGTGAGGAACA
R:
TCTTGCTGAAGTGGTATTTGCAGT
Band lengths:
196-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]