BtaINT0094537 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36615267-36616433:-
Coord C1 exon
chr12:36616345-36616433
Coord A exon
chr12:36615408-36616344
Coord C2 exon
chr12:36615267-36615407
Length
937 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
GTGTAACAAAACCAACACAGGAT
3' ss Score
0.92
Exon sequences
Seq C1 exon
ATTTATTGAGGGATGCTGTGAAAAATGGGGATTATATTACTGTGAAGGTTGCACTTAACTCAAGTGAAGAATATAACCTGGACCAAGAG
Seq A exon
GTGAAGTGTCTTTGTAAAAATCTGATGAAAGGAAGATGGAAAATAGCTCTATTAAAATAACTCAGGTTTATTCTTTAACTATAAAAGTAATACATGTTCACTTTATAAGAGTCAAACATTGTAGAAACGTGTAATAGAATTACAGTTCTTGTAATTCCAGCCCTGTATAATGCCCTTTAGTTACCATGATATGCCTGGTTTTGTCTATGGTTTAACCTCTGCATTTTGAGGGGAAAGTGACTCCTTGTTTTGTCACCATTTGTTTTTGATTGATAGTTGCCTATTTACAGCAACTGCCCCTCTCTATTGTTTTGGGGGTTTTTTTGACCATGCCCTTGGCTTGCCAGATTTTATTTCCTGGACCAGGGATTGAACTCATGCCCTCTGCAGTGGAAACACAGTGTTAACCACTGGACCTCCAGGGAAGTCCCCAATCTTTTATTGTTGCTAGGTTTTTTCACACTGATTTATAAGCATACTTTAATAGAAGCATATTAACCCTTTCTGTTTTATGTTTTTGAATCTTACTGCTTGGTGCTTGGGGAGATTTTATTTTTAGGTAGTTACATCATTTGATCTTTTCCTTTATGGCTTTTGGTCATCTAATCTTGCTTAGAAAATATTTTTATATATTCTTTTTTTACTTTTCTTGCTTTAATTGTGGACTTTTTAGGTTTAATCCCTTAGGATTACATTAAAATAGATTAATATGGCTCAGAATTGACATTTTAACATTTTGAGTCTTTTTGAGAAACGTATCTACTCTACATTCATTCAGCTCATCATTTCTTCTCTTAAACCAAATTCTTTGGGTTTTTTCTTCATGTAGTTCTTGTACATTTATTTTAGATGCATTCATACAAATCATCTTATTGTGTTCATTGGGATCTTTCTCTCCCACACTTTTGCTACCACGTGTGTAACAAAACCAACACAG
Seq C2 exon
GATTCGAGCGGGATGACACTGCTGATGCTCGCGGCTGCAGGAGGGCAGGACGACCTGCTGAGGCTGCTCCTCAGGAAGGGGGCGAAGGTGAATGGTCGGCAGAAGAATGGGACTACAGCACTCATCCACGCCGCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922:ENSBTAT00000061268:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002325=Ank=WD(100=66.0),PF127962=Ank_2=PU(6.5=12.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTATTGAGGGATGCTGTGAAAA
R:
CTTCTCGGCGGCGTGGAT
Band lengths:
230-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development