GgaINT0112892 @ galGal4
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178475729-178476709:-
Coord C1 exon
chr1:178476621-178476709
Coord A exon
chr1:178475870-178476620
Coord C2 exon
chr1:178475729-178475869
Length
751 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
GATGATTGATGCTGTTGCAGGAT
3' ss Score
5.65
Exon sequences
Seq C1 exon
CACTTCTGAGGGATGCTGTCAAAAGTGGAGATTATATGACAGTAAAGATGGCACTTTCTTCAAGCGAGGAATATAATCTGGATCAAGAG
Seq A exon
GTAATTTTTCTGTAATAGTTATTGAGTGGGGGAGTGCACAGATTTGGACTGTTTGAGAAGTTCTCTCGCTGACCAGTGGCAGATCTCGTAGAAGAAGCACAGTGGGTGAAAGAGGAGCACAAAGTAACAGGTGTTGGTATTTGTTCCCCATTTCCTTGAAAGAAGTGAATTTTTATAGAAGCATCCTAGCAGCTGGATCTGCAACAAATCTGCCCATTTTTGAGAATTGAAGTCCAGCATTTTAAGAACTGTTCATCATCTATTGCATGGTAGATCAGAAGATGCCAGATGAGCTGTTGAGGCAAGCGTGTGCTTTTTCAATTTTAGTGTTTAGTGGAAAATGTAAAAATGGGTGAGGGGAGAGTGGCTGCTCACAGAAATCTCTTTGTATTTTTACTCAAATAAAATCCAGAAGCGGTGTTGTGGTAGCAACTGGCTTAAGCCCTTGGGCTTTTTCTCCAGTGTTTGCCAATTTCTTTTTCCACTGTCTTGCTCTCTTCCCTGCTGTCCCATACCTTGCTGCCTCTTTTTCTGGCTCATTCTGTTTTTCCTTCGTATTCTGGAGCTCAGAGTGATGTTTGTGAGTGAGAGGAGTGTGTGGTGATAGTTTGTCAGTGTCTGGCAGTTGTGTATGTCTGAAGAGGGGAGGAGAACCTTCTGAAACCTGTTGCTGCATTTGCATTCTTTGTCTTGCGGCTGTGATCTATCTTCAGATATTTGATTCTTATGGTGATGATTGATGCTGTTGCAG
Seq C2 exon
GATTCAAGTGGAATGACTCTAGTAATGCTTGCTGCTGCTGGTGGGCATGACGACCTCCTCCGAGTCCTGATCAGGAAGGGAGCTAAAGTTAATGGCAGGCAGAAAAATGGAACAACTGCATTGATACACGCAGCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.4=90.0)
A:
NA
C2:
PF0002325=Ank=WD(100=66.0),PF127962=Ank_2=PU(6.5=12.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCTGAGGGATGCTGTCA
R:
CTTTTCAGCTGCGTGTATCAATGC
Band lengths:
230-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]