Special

MmuINT0100298 @ mm9

Intron Retention

Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:57303999-57307342:+
Coord C1 exon
chr14:57303999-57304087
Coord A exon
chr14:57304088-57307201
Coord C2 exon
chr14:57307202-57307342
Length
3114 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
ACAAGGTTTCACTAACACAGGAT
3' ss Score
3.63
Exon sequences
Seq C1 exon
ATTTGTTGAGGGATGCTGTGAAAAATGGAGATTATATTGCTGTGAAGGTTGCACTGAACTCAAATGAAGAATACAACTTGGATCAAGAG
Seq A exon
GTACTGTTTTTTGTTGTTGGTTTTGTTTTGTTTTTGGTTTTGTTTTTTTGTTTTTTTTTCTTTTTAGGAAAAAAAAAAATCTCACAAAGCAGCATGGAAACTAGTGTGACACACTATGGTAATTCAGTCATTTTCCTAGGAAAGCAATACATGTTAAGTCATTTTAAGTGTGCATTAGAGGTCTTAGAATCCCAGCCCTCCAAAATGACTGGTTTAGTATTATTTACTTTTCTGTTGCTCTAATAAAATGCTCTGACCAGAAGCAACTTGAAGGGAGAGTGTATTTGGGCAATCAGTTCTAGCAGGATAAGAGTCCATCCATCATGGCAGGGAGTCTTGTCAGCACCAGGCATGATGTCAGGAGCAGGAAGTGAGACTCACATCCTCAGACACAAAGGACAAAGCAGAGACAGCAAGACTCTGTCTCAAAGCTTATCCCCAGTGGCATACTTGCTCCAGCAAGGCTGCACCAATAAATCTTCCTAGACAGTGCCACTAACTGGAAAACGAGTATTTAAAAACTTAAGTATATGGGAGACATTTCTCACTCAAACCCTGCCTGGGGATTTATCTTAAGTTGCAGTGGTAAGTAGTATAAAAGAACCTGTGTTATATGTGGCTATTTTTTTATTTTTTAAATGTATTTTAATTTTTATTTTATGTGTATTGGTGTTTTGCCTGGACTTATGTCTGTGTGAGAGTTTCAAATTTTGGAGTTAAAGATAGTTGCGAGCTGCCATGTGATTTCTGGGAATTGAACCCAGGTCCTCTGGAAGAGCAGCCAATGTTCTTAACCACTGAGCATCTCTGCAGACCAATGTATATTTTGATTGTAGCTCACATATACAATTGCCCAGCTTTTTATTTTCACTCAGGATTTTTCATACCAATGTGTGTGAGATTTTTGTTTTTACATGGGAGTGTATTAGAGTCCTTTTCCTCTAGTTTTTAGGTAAAACAATGAATTTTTGGGAGAAAATTTTCTTTTGATATAGAGTCTCATTATATAACCCAGGCTAGCCTTGAATTATTGGTGATTTTATTACCTACATTTCTCAAATAGACCTGGCTCTAGTAATTTTTGCATTTACATAGGTATCTCTGTTGATGTGTTTTATGACTTTGAAGTGTCTCATCTTTACACTAGGTGGTTGGTTTTCTTTCTTTTTTGTTTTTTTTGTTTTTTTGCTTTAATGATATGTTTATAGTGTAAAATCTTGTTTTAATCTTTATTTGTTGGTGGGGGAAGTGTACGTGTGAGTTGCCTTCTGCAACTTAAAGAATTGGTTTTTTTCTGAGCCAGGCTCCTGTAGACAGGCTTTGTAACCAAGGATGACGGACCCCTAACTCCTGAGTGTTGGGATTATGAGTGTGAGTCTCCACACTCAACTAATGAAGTTCTTACTCTGATCATTTTAAATAGTGCCTTAGGTTTGCCATTCATTTTATACCAAGAAAACTTGATCTAGAATTTATTACACGGAAACTACTTAATTTTTGAAAGATTTATCATTGTATGCATTTTATGTATATGGGTGTTTTGTCTGCATGTATGTCTAGAAGAGAGCACCAGATCCCATGGGACTACAGTTATAGAAGGCTGTGGAGTGCTATTCGGGTGTTGGGAATTGAACTTAAAACCTCTGGAAGCAGATGGTACATTTATCTCTGAACCATCTCTTCAGCCCCTTTAAATTTTTTATTTCAGATATTTAACTTTAATGTGCATGAGTGTCTGCCTAAGTGTATATAGATGCACATGCGCATGTCAGAGCCTGCCGAGATTAGAAGAGGAGTTAGATGCTCTGGAATTGGAGTTACACCTGTGATCTGTCATCTGAGTGCTGGGAACTGAACTGGGTCCTTTGGAAGAGAAACAAGTGCTCCGAACCACTGAGCCAACCCCAGCCCAGGCCTAAAATTCAATGTTTATGTAGGTCGTATTGGACACAAAATTGCAGAAATCTTTCTGCCCCTGCCTTCCAAGAGCATGAGCCATCATACTTGCTTGCTTATACATGGACGTTGTAAAATTTAATAGCAATACTTATTTTTTTGAAACAGGATCTCACTATGTATTCCTCACAGGCTTGGAAGGCAGAGAGGTCCACTTGCCTCTGCCTTGAGTGTTGGCATTAAAGATGTTCATCACCGTGCTCGACAGCAACCTTTACATTTTTAAAATTCTAGGAGCTAGGCAGATGGCTTAGTGTATAAAAGGCTTGCCATGAAATATGAGGACCTGACTTTGAATCCACATAAGACAAGCACAGTAGCTAGCATCTGATCCCAGTGCTACTAAAACAAAATAGGAAGTAGAAACAGGAAAGATCCTGGAGACTTGTAGGCTGGCTAGCCTGCTGTATGCAGTAGTGCAAGAGAAGCGACCTTGTGTTTAACAAGGTTTGTCCTCTGATCCCCACCTATGCCCACTTGTTGTGTTGTATGCTTCACATACAGATTTTTAAAATGCTAGGGCTAGGGATATGGCTCAGTCAGAGAAAAGTGCTTGCCACGCAAGCATGAAGGACCTGAATTTGGATTCCTGTCACATATATAAAGAAAAAACAGGGTCAATAGCACATATCTAGGAGGCAGACTATGCCTTGGGCATGCAGGCCAGCCAGCTTAGTTGAATTTGATGAGAAACCTTGTTTCAAAAAAAAATAAAGTGGAGTGATGCTGAAGCGATGGTTGAGTGGTTGCCTTGCAGAGGACTGCAGTTCAGTCCCCAGCACACAGAGAGCTCACAAGAGTCTATGAACTAGAGTTCCAGGGGATTAGTTGTCTTCTGGACTTATATGCCCATGCCCCCACAAAGATACGCAGACATAATACAAATTGAAAAATAATAAAAGTGAATCTTAAGAAATAGGGCAGTGAACCTATTTCTGGCCTCTATATGCATGCGCCCCCCCCCCCCATGAATACATACACACAAAATCCTAAAGATATTTTTTCTGATTACTTACAAGAATATTATAGTAAGCAACCTAACCTAAGTGGATCCTTAAGTCATTGTTCTTTAGTGATTTCTTCTTGAAATAGCATGACTGAAGAGTCTTGCTTCTAAAATGTTTCTGATTAAAGACTAACAAGGTTTCACTAACACAG
Seq C2 exon
GATTCTACTGGGATGACCCTGGTGATGTTGGCTGCAGCAGGCGGTCAGGACGACCTCCTCAGACTCCTTATCACCAAAGGTGCAAAAGTGAATGGGCGCCAGAAAAACGGGACTACAGCCCTCATTCATGCCGCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-Mphosph8:NM_023773:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.033 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127962=Ank_2=PU(28.4=90.0)

							
A:
NA

							
C2:
PF127962=Ank_2=FE(48.4=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000112170





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr13:19659290-19661697 
ALTERNATIVE
HsaINT0104639
(MPHOSPH8)
Human
(hg19)
chr13:20233430-20235837 
ALTERNATIVE
HsaINT0104639
(MPHOSPH8)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr12:36615408-36616344 
LOW PSI
BtaINT0094537
(MPHOSPH8)
Chicken
(galGal4)
chr1:178475870-178476620 
ALTERNATIVE
GgaINT0112892
(MPHOSPH8)
Chicken
(galGal3)
chr1:183535112-183535862 
ALTERNATIVE
GgaINT0112892
(MPHOSPH8)
Zebrafish
(danRer10)
chr9:21660900-21661870 
LOW PSI
DreINT0097309
(mphosph8)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"