HsaINT0104639 @ hg19
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:29810]
Coordinates
chr13:20233341-20235978:+
Coord C1 exon
chr13:20233341-20233429
Coord A exon
chr13:20233430-20235837
Coord C2 exon
chr13:20235838-20235978
Length
2408 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TATTTAACAAACCAACACAGGAT
3' ss Score
2.12
Exon sequences
Seq C1 exon
ATGTGTTAAGGGATGCTGTGAAAAATGGGGATTATATTACTGTAAAAGTTGCACTTAATTCAAATGAAGAATATAACCTGGACCAAGAG
Seq A exon
GTAATATGTCGTTGAAAAATCTCATGAAAGGAAAATGGAAAGTAACACTTGAAAGAATTCAGTTTAACTTTTCATTTATTTTAATTACAAAAGGCTGGGCGTGGTGGTGCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGAGGATTGCTTGAGCCCAGGAATTCAAGACCAGCCTGGGCTCCATGGTGAAACCCCAACTCTACAAAAAATACAAAAATTAGCTGGACATGGTGGTGTACACCTTTGGTCCCAGTTACTTGGGTGGCTGAGGTGACAGGATCACCTGAGCCTGGGAGGTCAAGGCTGTGGTAAGTGGAGATCACACCACTGCACCCCAGCCTGGGCAACAGAGCAAGACTCCCATCTCAAAAAAAAAAAAAATAATGCACGTTCACTTTGTAAAATAAAAAAATTGTAGAACCCTATAAATGTACAATTATAGTCCCTTTAATTCCAACCCCCTCCCCTCTAAAAGTGATGGTTTGGTTTGGTTATGGTCTACCTGTTTTGTATGTGGTTTACCCTCTGCCACTCTTGAGAGCGTAGAGTGAGACCATTTTCCTGTGGTCATTTGTGTTTCTTTGATGGTTGTCCCATTTACAACAATGGTCCATCTCTCCTGTTGTAGCTGGGGATTTTTCATACTGATATGTATGGATTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGACTACAGTTGCCTGCCACCTCGCCCGGCTAATTTTTTGTATTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCTGCCTCCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCACGTATGGATTTTTTTAATGGAAGCATATTGACCCTTTCTCCCTAGATTTTAGGTTTGTGTTTGAGTCTTGTATTGCTTGAAGATTTTTAGTTTTAGGCAATCATATCTGTTGATCTTTTACATTTATGGCTTTTGGGTATCTTGTCTTGCTTAGAAAATATTTTTATATTCTTTAGTTTTTTAGCTTAGCTGTGGATTTTTTAGGTTTAATCCTTTGGGATTACAATTCACAAAATTATTGGGCTTTTGATTAAAATTGCATGAAATAATATAGATTGAGAATTGACATTTACTTTTTGCATCTTCTGTCTAGGAACATGGTAATTCTACATTCACTCAGCTCTTCATTTATATCCTTAAGCAAAGTTCTATGGGTTTTTTCATTCATATAGACGTTGCACATTTCCTATAGATGTATGCCTATATGTTTTATAATGGTCATTAGAGTCTTTTTTCATTTACATTTTGTTTTCTAACTGGTTATTGCTTGTCGATGGTAAAGCTGTGGATGTCTTTGTACACATAAGTGTGTGTAACTCCAGTCATTTAATGAAATTCTTATAGTTTTTAAGTTACTTGTTTTGGATTTTCTAGGTAGAAAATTTGATCGTATGCCCCCCAAAAATTCACTGTTCATTTTGTATGGTGCAAACTTTTCATGTGCCTTTAGGATTTAATACACAAAACAAAAAGAAGATACAAAAATGAGAGCTGGGCGTGGTGGCATGCACCTGTAATCCCATCTACTTGAGGCTGTGGCAGGAGGAATGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCTGACATAGCAACACCGTCTCAATAAAAAAGAAAGAAAGAAAAACAACACCAACAAAAAAAATTGAAGCATTCCTTGGAGATATTGTGGGTTTGGTTCCAGACTGTTGGAATAAAGCGAGTCACACAAATTTGTTGGTTTCCTGGTGCATATAAAATTTAGGTTTACACTATACTGTAGTCTAAATGTGAATAGCATTACATCTTTTAAAAAACCTATATATCTTAATTTACAACACTTTATTGCTAAAAAATGCTGACACAACAACACAAAATGAGCACATGCTGTGGGGTAATGATGTGAATAAACGTGCTTGTGGCAGGGTTACCACAAACCTTCCCTTTGTAAAAAACACAGTCCCTGTGAAGTGCAGTAAAGCAAAGCTCAGTGAAACAAGGTAGGCCTATAGAGGAAAGTTGTAAAATTTTATGCAAACATTCATATGTGAAAAGATACTCTAAAAGCTAGTAGCTTCTGATGGTTGGGATATTTTAGTGAAAATCCTAAGTAGATGCCTAAATCAGTGCCTATTAGTGATTTCACATTGAAACATCTCGAGTGAGAAGACTTGGTTCTGAAATTGTTCTGACTAAAGATTAACACGTTTTTTATTTAACAAACCAACACAG
Seq C2 exon
GATTCCAGTGGAATGACACTGGTGATGCTTGCCGCCGCCGGAGGGCAGGACGACCTCCTGCGACTCCTCATCACAAAAGGCGCGAAAGTGAACGGTCGGCAGAAGAACGGGACCACCGCCCTCATTCATGCTGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199-MPHOSPH8:NM_017520:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.249
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.4=90.0)
A:
NA
C2:
PF127962=Ank_2=FE(48.4=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)