DreINT0097309 @ danRer10
Intron Retention
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21660759-21661959:-
Coord C1 exon
chr9:21661871-21661959
Coord A exon
chr9:21660900-21661870
Coord C2 exon
chr9:21660759-21660899
Length
971 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
ATGTCTGCTGCCACCTGCAGGAC
3' ss Score
10
Exon sequences
Seq C1 exon
CCGAGCTACGAGAAGCAGTGAAGAACGGGAATTACTTGGCGGTGAAACGTGCTCTTAGTTCAAAAGAGGACTACAATCTGGACCAGGAG
Seq A exon
GTGCGCCGCTTAGTTCTTGTATATTTTTTTCTTCCTCTGCTGTGTCTGTCTTGAAATTTGTATTATAAGTAACTGGGTCATTCTGATCCCTGGGATAAGCTTAACCTAATTATGCATAAAACTTAATAATTTAGTGGTGTACAATACTGAAAGAAACATTTTGATCGTTAATTTATTTTTTGGTAATAATTTTTATTATGTTTTTTGTTCTGGTGCATTGATTGGTTTAGGGCTGTCTTTGATAAATTAATAGGTCTCAAAATTGATTTCTGGAAGGCCGCAGCTCTACACAGTTGCTCTAACCCTAAGCAAACAGCTGGTCCAACTAAGCAAGGTGTTCAAGACTACTAGAGACTATAGACCAGGTGTGATTTGGAGGTGGTTGGAGTTAAACTATGCAGAGCTGCAGCCCTCCAGGAATTGAGTTTGAGACTATTGATTTAATTCAATGTGTTTATTGGTGAAAAACATACAGTATTAATGTAATTCACTAGTATTAACTACAAAAACGAACAAAAAAACTAATAAGAGGATGTTTTTTGCTTTCAAAACTTCTGAATTGATGTTAGAAATGATTATAATATGAATTATTCTAACTGCTTTGTAATGGGCCTCATCACAGAGCGAATGCTTTTAGACTTTCCAAATGAGTGGCATTCTATATTGTCAGTTTACACAATGTTAAAACAATAATCATGATCATATCATCCGCGGCTAGAAATATTGCACATGCCTAGCAGAGTTATGTTATCGTTAATAGTTCATTTATACATACCTGCTACTATGATTAAAATATTTAATTTATTTAATCAATCCAGAAAGATATTTTTAGGATCAAGGGTGAATAGTTATGCCATCTACCAGTAGTGTCTAACTAGACGTTTGATGTTTATCCATACCTTGAGAACTGCTGTTTTAAAAGTTGTAAATAACTCTCTCTGAATGTTTTGTATGTCTGCTGCCACCTGCAG
Seq C2 exon
GACTCTAGCGGTATGTCTTTAACGCTGCTGGCTGCTGCAGGCGGTCAGGATGACATCCTCAGGCTGCTCATTAAGAAAGGAGTAAAGGTCAACTCCAGACAGAAGACTGGCACCACGGCACTGATGCATGCTGCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576:ENSDART00000080404:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(16.7=30.0)
A:
NA
C2:
PF138571=Ank_5=PD(79.6=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTACGAGAAGCAGTGAA
R:
CATCAGTGCCGTGGTGCC
Band lengths:
214-1185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]