BtaINT0094538 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36614558-36615407:-
Coord C1 exon
chr12:36615267-36615407
Coord A exon
chr12:36614645-36615266
Coord C2 exon
chr12:36614558-36614644
Length
622 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TTTTTTGTTTTTTTTAACAGAAC
3' ss Score
11.19
Exon sequences
Seq C1 exon
GATTCGAGCGGGATGACACTGCTGATGCTCGCGGCTGCAGGAGGGCAGGACGACCTGCTGAGGCTGCTCCTCAGGAAGGGGGCGAAGGTGAATGGTCGGCAGAAGAATGGGACTACAGCACTCATCCACGCCGCCGAGAAG
Seq A exon
GTGGGCCCTGCAGCATGCTGTTCTTTCACAGTCTTGGAGACAGAATCTGTGTCTGTGGGGCAGTGTGCTAGTCACACAGTCACATAACTTAGTTCAGTTCATCTATGACTTGTCATAAATCAGTGTTTTTATTGACAGTTGTACTTTGAAACTTCCAAATATCGTGTATCTAGCTGGAGGTGATTTGTATTGAAAAAGAACTTCTGATTAAGGTATTAATATTGATTTAATTCTTAGATTTTTAAAAAATCTTTTCCAATCTAAAGTATTCCTTTGGTTAATAATTTAATTAAAATATTCCCATGTTATTTTATTAAAGGACTGAGATGAAGAGGTTCTTTATCTTGAAATCAGTGGTTAAACTTGAGGTTGAAGTTGCTGGCAGACAGTGTGTGGCTGTGCAGGGTGCCAGTGGGAGGGGCCGCTCCATGCAGGGTCTTCCTGGGACCCTGGAGGGCGGGGGCGGGAGGGAGGAGCGAAAGTGGTGGTCTGTGGTATTCACCAACCTGCAGGAGATGGAATCTGAGTACTTTTGCTAATGGCTAGAAATTTCAAAACATCTTGAAATATCTTGTAAAGAATTTGAGGGGATTAAATCCTTTTTTTTTGTTTTTTTTAACAG
Seq C2 exon
AACTTTTTAACTACTGTGGCTATTCTTTTGGAAGCAGGAGCTTTTGTAAACGTCCAGCAGAACAATGGTGAGACGGCGCTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922:ENSBTAT00000061268:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=66.0),PF127962=Ank_2=PU(6.5=12.8)
A:
NA
C2:
PF127962=Ank_2=FE(30.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCGAGCGGGATGACACTG
R:
ATTAGCGCCGTCTCACCATTG
Band lengths:
224-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development