MmuINT0100299 @ mm10
Intron Retention
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56688365-56689115:+
Coord C1 exon
chr14:56688365-56688505
Coord A exon
chr14:56688506-56689028
Coord C2 exon
chr14:56689029-56689115
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TGTTTCCTGTTTTTTAATAGAAC
3' ss Score
9.26
Exon sequences
Seq C1 exon
GATTCTACTGGGATGACCCTGGTGATGTTGGCTGCAGCAGGCGGTCAGGACGACCTCCTCAGACTCCTTATCACCAAAGGTGCAAAAGTGAATGGGCGCCAGAAAAACGGGACTACAGCCCTCATTCATGCCGCTGAGAAG
Seq A exon
GTTTGAGACTTGACTCCATGAAGGGAAACTGAGAATCTTTTTTTGTAGTGAAATATAATGGTCACATGTCATGTAGCCTTACTTTGTACTTTTAGTGGGTCTGTGATGTGAATTTCTGCTATTAGCAGTACTTTGTAATCAGATTTAAAGTGTGACTTGCCTAATCGGCAATTTGTAGTAAGCACAACTTCTAGCTACACTGCCAATACTTATTTCAGTCTTAAATGATTTAGAGGACTCATAGGTAGAGTTTCTCACATGGAAGCTACAGGGTAGACGGCAGGTGGCACTTGCTGACAAATCAGTGAGGGACTAGACTCAGGAGGTGGCTTCTGTGGCCCTCCAGTGAAAATCAGGGAGACAGTGTCCAGCCACCTGCATGGAGTTGAATCTGTGAGTCTTTTTCCTTGTTACAAAACAGCTAGAAGGAAGGTCTTGTCTTTTAAGGAAATCTTGGGACTAAATTTGTTTGTTTTTTTCTTCTCCATTAATTTACTCACTTTTGTTTCCTGTTTTTTAATAG
Seq C2 exon
AACTTTTTAACAACTGTAGCTATTCTTTTGGAAGCTGGAGCTTTTGTGAATGTTCAGCAAAGCAATGGTGAGACTGCGCTCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184:ENSMUST00000116468:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(48.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(20.0=65.5),PF0002325=Ank=PU(21.2=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCCTGGTGATGTTGGC
R:
CATGAGCGCAGTCTCACCATT
Band lengths:
214-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types