GgaINT0112893 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183534096-183535111:-
Coord C1 exon
chr1:183534971-183535111
Coord A exon
chr1:183534183-183534970
Coord C2 exon
chr1:183534096-183534182
Length
788 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
TTGTTTTTTTTCTTTTAAAGAAT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GATTCAAGTGGAATGACTCTAGTAATGCTTGCTGCTGCTGGTGGGCATGACGACCTCCTCCGAGTCCTGATCAGGAAGGGAGCTAAAGTTAATGGCAGGCAGAAAAATGGAACAACTGCATTGATACACGCAGCTGAAAAG
Seq A exon
GTTGGCTCGGTCACTGTCGTATTTGTAGTTCTCGACTCTTTCATTTAGATGTAAAAGTAGTATCCTTTTTTCACCTCCCTTGGGTGATACCTAATAATTAGTAGGATGCAGCAGGATGACCTTCACTGCATAACATTGGTGGCTGTGGTTCCTGTAAGCTAAATAAATTCTGTAGGTGATAGTAAAACCTGTCTATGTAGGGAATATCACAGGGCAACTTGGAAAGAAAGCTGATGCGAGGGCTGTCTCTCAATTTCTCTGTCACAGGGCTGAAGTTCTTGCAGTAGAATTGCTTGTTTTCTTTGGATAGGTGGAATCCAGACTTGTGAAACTTGGAGACCAAATCTCTGATTAAGCACAATTTGCTACTTGAGAGCAGGGTATAGAGGTAGTGACAAGCTCTGCACAATCTAAGGCCAGCTTGACTTGACTGCTATATTAAAGGATGTTTGATGGTAATCTTTTTTCAAGTTGGTTCACTTACTTTCCCAGGTAGAGGAGGTATGAGGCCAAAAAGGAACTTGATTCCTGTTCGGTGATTAATGCAAACATACTGTTTGGATTTGGGTCATTTTTTTACCCCCCTGGGGTGTTTGTTATTACAGGGTTTAATAAAAACTAATTGTAAATGCCTGTGGTATTTGCCTCAGTCTAAATTGATCTTTATGAGCAATGAAAGAGAACAGCATCAGTTCTGTCATGCATCATGCTTGTATTTTAAAATGAAAACAGAATATATTATACCTACTTGTCTTGTGGTTTTATTTGTTGTTTTTTTTCTTTTAAAG
Seq C2 exon
AATTTTCTAACAACAGTGGCTATTCTTCTGGAAGCTGGAGCGTATGTGAACATGCAGCAGAGCAGTGGTGAAACTGCATTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=66.0),PF127962=Ank_2=PU(6.5=12.8)
A:
NA
C2:
PF127962=Ank_2=PD(20.0=65.5),PF0002325=Ank=PU(21.2=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAATGACTCTAGTAATGCTTGC
R:
CTTCATTAATGCAGTTTCACCACTG
Band lengths:
222-1010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]