DreINT0097310 @ danRer10
Intron Retention
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21660549-21660899:-
Coord C1 exon
chr9:21660759-21660899
Coord A exon
chr9:21660636-21660758
Coord C2 exon
chr9:21660549-21660635
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
3' ss Seq
ACTCAGTCTGTTTGGTGCAGAAC
3' ss Score
5.08
Exon sequences
Seq C1 exon
GACTCTAGCGGTATGTCTTTAACGCTGCTGGCTGCTGCAGGCGGTCAGGATGACATCCTCAGGCTGCTCATTAAGAAAGGAGTAAAGGTCAACTCCAGACAGAAGACTGGCACCACGGCACTGATGCATGCTGCTGACAAG
Seq A exon
GTGGAGAAAACCAAGGTTTTACTCGGGGAAAAAAATCATTTGTTCACTTTATTCACTAATAAAGGATCATCTTAGTCAAATATTGGGTTTATGTCTATTAATAACTCAGTCTGTTTGGTGCAG
Seq C2 exon
AACTTCTTGACGACAGTGGCCATTCTTCTGGAGGCAGGAGCTTTTGTAAATGCTCAAACTCTGGGTGGAGAAACGGCTCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576:ENSDART00000080404:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PD(79.6=91.5)
A:
NA
C2:
PF127962=Ank_2=PU(32.9=96.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTAGCGGTATGTCTTTAACG
R:
TCATGAGAGCCGTTTCTCCAC
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]