HsaINT0104640 @ hg38
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19661698-19663126:+
Coord C1 exon
chr13:19661698-19661838
Coord A exon
chr13:19661839-19663039
Coord C2 exon
chr13:19663040-19663126
Length
1201 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GCCTTTTTTTCTTTTCATAGAAC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GATTCCAGTGGAATGACACTGGTGATGCTTGCCGCCGCCGGAGGGCAGGACGACCTCCTGCGACTCCTCATCACAAAAGGCGCGAAAGTGAACGGTCGGCAGAAGAACGGGACCACCGCCCTCATTCATGCTGCAGAGAAG
Seq A exon
GTTTGTGGCTTCTTATGCATCAGTTTCAGAGCTTTCATGGTATTCCTGCCGATGGACTGAGAGGATCTCTTTGGTAGTGAAATATAGCAGTCACATGGTCACATCGCTTTTTTTTTTTTTTTAGACGGAGTCTCGCTCTGTCGCCGAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAGCTCCACCTCCCGGGTTCACTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCAGGTACCTGCCACCACACCCGGCTAATTTCTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGTATTACAGGCGTGAGCCACCGCGCCTGGCTGTCACACGGTCCCATAGCTTTTTAAAAATTTATTTTTAGAAATAAGGTCTCACTCTGTCACACAGGTTGGAGTGCAGGTGGCACCATCATAACTCACTGTAGCTTCAAACTCCTGGACTCAAGCAATCCTCTCGCCTCAGCCTCCCAAGTAGCTGGGACTAAGTGTGTACCACCACACCTGGCTAATTTTAAAAATTTTTGTAAAGACATGGTCTCACTGTGTTGCCCAGCCTGGGCTCAAGTGATCCTCCTGCCTCAGTTAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCTGGAGTAACTTTTTAATTTTGTTTCAGTTGATCTGTGACATGTAATGAATGGATTTATCATCAGTAGTACATTGTAATCACATTTCAAAATGTGATTTATCTCGTTGGAAGTAATTTATATTAAAATACTCTGATTAAAGTACTAATATTTTAATCTTAGATAATTTAATTTTTTTGAATAAATGGTATTTGTATTCCTTTTGGTTAATAATTTAATTGAAATGTTTCCATATATTATCTTTTTAAAGGATTTATATGCAGAGGTTCTTAGGTTGGAGCTAGCGGTTCCATTCGCAGTTGCTGGCAGCACAGTGAGTGGCCACGTTTGGGCCTCTGTGGGGCGGGGTGCACCCCCGTGGCCCCACGGGAATGCTGCAGCCCGCAACCACTTGTGATAGAACCTGCTGGGTATTTTTCCTGATGACTAAAAATTTCAAAATATCTGAAAACTGTCTTTTAAATAATTTGGGAAATTAAATTTGCCTTTTTTTCTTTTCATAG
Seq C2 exon
AACTTTTTAACAACAGTGGCTATTCTTTTGGAAGCAGGAGCTTTTGTAAATGTCCAGCAAAGCAATGGTGAGACTGCACTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199:ENST00000361479:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(48.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(20.0=65.5),PF0002325=Ank=PU(21.2=24.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAATGACACTGGTGATGCT
R:
CAGTGCAGTCTCACCATTGCT
Band lengths:
215-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development