BtaINT0094776 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47745430-47745973:+
Coord C1 exon
chr19:47745430-47745549
Coord A exon
chr19:47745550-47745793
Coord C2 exon
chr19:47745794-47745973
Length
244 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CCATGCCACCTTTCCCACAGGGG
3' ss Score
9.22
Exon sequences
Seq C1 exon
CGGGCGGCGCGGTCCTGTCCATCCTGGATGAGATGGAGAACGTGTTTGTCTGGGAGCATCTGCAGAGCTCTGAGGGCCAGAGTCGGGGCGCCTGGCTGGGCATGAACTTCAACCCCAAAG
Seq A exon
GTGGGCCTCCTGGGTATAGGGTCAGGAGGGGCAGGCCTCGGGCTACAGCGGGAGGCCCTCCGCTGGGGCTTGGCTGGTGGTGAAGGGTGGCGGGGTGGGCGGTGAGGGCCTGTGGGAGGGGGGTGAGGATCTGTGGGATGTGGGGGTTTTCTAGAACAGGCCTCTTCTCTCCCAGCTGCTTCTGCTCCATTTCGCTGCCCCCCCATCCCCAACAATGCACCCCCCCATGCCACCTTTCCCACAG
Seq C2 exon
GGGGCACCCTGGTCTGGCAGGACAACACAGCTGTGAACTACTCCAACTGGGGGCCCCCGGGCCTGGGCCCCAGCATGCTGAGCCACAACAGCTGCTACTGGATCCAGAGCAGCAGCGGGCTGTGGCGCCCGGGGGCCTGCACCAACATCAGCATGGGCGTCGTCTGTAAGCTCCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739:ENSBTAT00000020897:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.4=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTCCTGTCCATCCTGG
R:
CTCGAGGGAGCTTACAGACGA
Band lengths:
292-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]