MmuINT0100623 @ mm9
Intron Retention
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105209621-105210091:+
Coord C1 exon
chr11:105209621-105209740
Coord A exon
chr11:105209741-105209911
Coord C2 exon
chr11:105209912-105210091
Length
171 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCAATGGGTTCCTTCCACAGGAG
3' ss Score
8.77
Exon sequences
Seq C1 exon
CTGGTGGGACGGTTCTGTCCATTCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGGCATGAACTTCAACCCCAAAG
Seq A exon
GTGGGTGCTCTGTGTACGGGAAGGGAAGGGCTCAGGCTGCAAGAGGGATGCTTACCACTGTCTCCAGGCTTGTGAAAGTACAGCAGTGGATCGTGGTTATCGCCTCCCACCTAGAAACCCCCCTTCCACCTATTCCCATTCCCACACCTTCCCAATGGGTTCCTTCCACAG
Seq C2 exon
GAGGCACGCTGGTCTGGCAAGACAACACAGCTGTGAACTATTCTAACTGGGGGCCCCCTGGCCTGGGCCCTAGCATGCTAAGCCACAACAGCTGCTACTGGATCCAGAGCAGCAGCGGACTGTGGCGCCCCGGGGCTTGTACCAACATCACCATGGGAGTTGTCTGCAAGCTCCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-Mrc2:NM_008626:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.4=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTTGTCTGGGAGCACC
R:
AGCTTGCAGACAACTCCCATG
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: