RnoINT0094084 @ rn6
Intron Retention
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93578672-93579118:+
Coord C1 exon
chr10:93578672-93578791
Coord A exon
chr10:93578792-93578938
Coord C2 exon
chr10:93578939-93579118
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CCAATGGCTTCCTTCCACAGGAG
3' ss Score
9.23
Exon sequences
Seq C1 exon
CTGGTGGGACAGTTCTGTCCATTCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGACCGCTGAAACCCAGAGTCGGGGTGCCTGGTTGGGCATGAACTTCAATCCCAAAG
Seq A exon
GTGGGCGCTCTGTGTGGGGAAAAGGAAGGGACCAGGACTCAGGCTGCGAGAGAGATGGAGGTTAATGAGAACATGCCTGCTCTCTCCCACCTATAAAACTCCGACCTGTTCCCCTTCCCACACCTTCCCAATGGCTTCCTTCCACAG
Seq C2 exon
GAGGCATGCTGGTCTGGCAAGACAATACAGCTGTGAACTATTCTAACTGGGGCCCCCCTGGCCTGGGCCCTAGCATGCTAAGCCACAACAGCTGCTACTGGATCCAGAGCAGCAGCGGGCTGTGGCGCCCCGGTGCTTGTACCAACGTCACCATGGGAGTTGTCTGCAAGCTCCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548:ENSRNOT00000055137:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.4=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTTGTCTGGGAGCACC
R:
CAGACAACTCCCATGGTGACG
Band lengths:
247-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]