GgaINT1018172 @ galGal4
Intron Retention
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2424332-2424906:+
Coord C1 exon
chr27:2424332-2424451
Coord A exon
chr27:2424452-2424726
Coord C2 exon
chr27:2424727-2424906
Length
275 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCCAGTTCTTTCGCTTCCAGGAG
3' ss Score
9.27
Exon sequences
Seq C1 exon
TTGGTGGCACAGTGTTGTCCATCCAGGATGAGATGGAGAACGTCTTCGTGTGGGAGCACCTCCAGGCATACGAGGGCCAATCCAAGGGTGCCTGGCTGGGCATGACGTTCAACCCCAAAG
Seq A exon
GTACGGGGCACAAAAAGACCCTTCCTGGGTAACACCATGAATTCTCAGTAGCCTTATGGTGAACAGAGGAGCCCATTGTGGTGGCTGCAGTATGGGGGGCTCACACTGTGACCATGAGGGCTGATGTCTCAGGCTGTGTTAGATGTGCCAAGTGTGTCCTCCCTGGCCTTGGGGGTCCTCCCCATCACCCCATCACACCTCCCCCTGCTTTCAGCACCAGGATAAAGGCAGGGCATCCCCGCTGGCATCCCCAGACCCAGTTCTTTCGCTTCCAG
Seq C2 exon
GAGGCACCTTGGTTTGGCACGACAACACAGCTGTGAACTACTCCAACTGGGGCCAGCATGACACGGGGCCCAGCATGCTGAGCCAGAACAGCTGCTACTGGATCCAGAGCAGCAATGGAGTCTGGCGCTTGGGCTCCTGCACCAATGTCACCATGGGTGTCATCTGCAAGATCCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461:ENSGALT00000000627:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.4=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCACAGTGTTGTCCATCC
R:
GGGATCTTGCAGATGACACCC
Band lengths:
292-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]