HsaINT0104966 @ hg38
Intron Retention
Gene
ENSG00000011028 | MRC2
Description
mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr17:62690642-62691128:+
Coord C1 exon
chr17:62690642-62690761
Coord A exon
chr17:62690762-62690948
Coord C2 exon
chr17:62690949-62691128
Length
187 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CAGTGCCTTCTTTCCTGCAGGAG
3' ss Score
9.72
Exon sequences
Seq C1 exon
CGGGTGGGGCCGTCCTGTCTATCCTGGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGAGCTATGAGGGCCAGAGTCGGGGCGCCTGGCTGGGCATGAACTTCAACCCCAAAG
Seq A exon
GTGGGTGCCCTGTGTGTGGGGTGGAGAGGTCAAGCCTCAGGCTGTAAGGGGCTGCCCTCCACTTTGCCCTGAGCCTTGTCCTGGGGCTTGTCGGGGGACAGGGAGTCGGTTCTAGAACACACCTGCTCTCCTCCACCTACTCCTGCCCCACCTTGTCCCTGCTCCCTCAGTGCCTTCTTTCCTGCAG
Seq C2 exon
GAGGCACTCTGGTCTGGCAGGACAACACAGCTGTGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAGCTGCTACTGGATTCAGAGCAACAGCGGGCTATGGCGCCCCGGCGCTTGCACCAACATCACCATGGGTGTCGTCTGCAAGCTTCCTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028:ENST00000303375:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(51.4=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTTGTCTGGGAGCACC
R:
GAGGAAGCTTGCAGACGACAC
Band lengths:
258-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development