BtaINT0094780 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47723552-47724272:+
Coord C1 exon
chr19:47723552-47723665
Coord A exon
chr19:47723666-47724125
Coord C2 exon
chr19:47724126-47724272
Length
460 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCGCCCTGCGCTCCCCACAGATC
3' ss Score
10.52
Exon sequences
Seq C1 exon
GGCTCCTCACTGGCTACAGCTCCACACTGTGGATTGGTCTTAACGACCTGGACACCAGTGGAGGCTGGCAGTGGTCAGACAACTCGCCTCTCAAGTACCTCAACTGGGAGAGTG
Seq A exon
GTGAGGCGCCGGGTTTGGGGTGCAGGGCGGCCTGGGGATCCCACAGGCACTTGGTCTCCTAGGTACTCCTTCCCTGGTACCCTACTCTAGACCAGCAGATTTCCACCCACTCCAGATTGGGTGCCAGTGGTCCGTGCAGCACGTTGTCTGAATTAGGAATGATGCCCTTTCCTGGTGGCACTTGGCCTGGAAGGTGGACTGGATTTCAACCCCATGCAACCCTTCAGCTACGGGCACTGGGGCCCTCAGCAGGCCTGGCCAGGGAGGGTGGGCATGGTTGGCCCAGGCAGAAGGTCGTGGACCACGTGAGCCCCGGGGAGGAGGCAAGAGAGCCGAAGCGCAGCGCTGGGCATCTGAGCGGGCTCAGGCTTCCAGGGAAGCATGAGGCTCGGGGGAGGGCTCCCGGGCCAGGGGGTGAGTTCCTCTCCCCTGGGGCGCTGGCGCCCTGCGCTCCCCACAG
Seq C2 exon
ATCAGCCGGACAACCCGAGCGAGGAGAACTGCGGGGTGATCCGCACGGAGTCGTCCGGCGGCTGGCAGAACCGCGACTGCAGCATCGCGCTGCCCTACGTCTGCAAGAAGAAGCCCAACGCCACGGCCTCCGAGCCCCCACCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739:ENSBTAT00000020897:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.420
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.5=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.6=72.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTCACTGGCTACA
R:
GTGGCGTTGGGCTTCTTCTT
Band lengths:
238-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]