RnoINT0094089 @ rn6
Intron Retention
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93559079-93559812:+
Coord C1 exon
chr10:93559079-93559192
Coord A exon
chr10:93559193-93559668
Coord C2 exon
chr10:93559669-93559812
Length
476 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCACCCTACCTGCCCCACAGATC
3' ss Score
9.38
Exon sequences
Seq C1 exon
GACTCCTCACGGGCTACAGCTCCACGCTGTGGATTGGCCTTAATGACTTGGACACCAGTGGAGGCTGGCAGTGGTCTGACAACTCGCCCCTCAAGTACCTCAACTGGGAGAGTG
Seq A exon
GTGAGGCATGGGGACCCTATGGACACTTGGCTTCTTTCTACCCTACTCTAGAGGTGGGAAGTCTAGGCTTTAGCCCTCCTGGAATGGCCCCGTAGCCTGTGGCGGGCCTTGGTATGAAATAGGAATTGCCTGTGTCCTCTCAGGTAGATGTGTCTTGGTCCAGGGCTTGTGAGTGGACCTGGTTTTAGTCTCTATTCACAGCTTTTACATACACAGCTGCACCCATGTACCAAGGCCAGGGAGATAGGGGATAAACTCTACGTTGCTGACTAGGGGGTTCAGGGTGGCATGAGCCCAGGCTATAAAGCAGGGTGACCCAGTGGTGCAATGTACAAAGTTGAATGGAGGCCGGGCTTCTCAGGCTAATGCCAACGTTGCAGGGAGTGGAGGGAGAGAAGAGGCCCAGAAGGGGGCCTGGGAGGGACATAATTTGAGCTTCCCTCTCCTGGGGTGCTGGCACCCTACCTGCCCCACAG
Seq C2 exon
ATCAGCCGGACAACCCAGGTGAGGAGAACTGTGGAGTGATCCGGACCGAGTCCTCAGGTGGCTGGCAGAACCATGACTGCAGCATCGCCCTGCCCTATGTCTGCAAGAAAAAACCCAACGCCACAGCCGAGCCCATCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548:ENSRNOT00000055137:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.5=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.6=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCTCACGGGCTACAGC
R:
CTGGATGGGCTCGGCTGT
Band lengths:
254-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]