MmuINT0100628 @ mm10
Intron Retention
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105328663-105329368:+
Coord C1 exon
chr11:105328663-105328776
Coord A exon
chr11:105328777-105329224
Coord C2 exon
chr11:105329225-105329368
Length
448 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCACCCTGCCTGACCCACAGATC
3' ss Score
8.27
Exon sequences
Seq C1 exon
GGCTCCTCACGGGCTACAGCTCCACGCTATGGATTGGCCTTAATGACCTGGATACCAGTGGAGGCTGGCAGTGGTCAGACAACTCACCCCTCAAGTACCTCAACTGGGAGAGTG
Seq A exon
GTGAGGCATGGAGACCCCATGGACACTGGGCTTCCTTCTACCCTACTCTAGAGGTGGGAAGTCTGGGTTTCCGCCCTCTTCTGGAATGGCCCCATAGCCTGTGAAGTGCCATGGTATGAAATGGGAACTGCTTTTGCCCTCTCAGGTAGATGAGTTCTGGTCCAGGGCTTGGTGAGCAGATCTGGTTTTAGTCTCGTTCACAGCTCTTAGGCACATAGATGCACCCATAAACCCAGGGCCTGGAAGATAAGTTTACATTGCTGATTAGGGAGTTCAGTGTGGCATGACCCAGTGGTGTAATATACAAAGGTGGATGGAGGCTGGGCTTCTCTGGCTAATGCCGACATCCGGGGAAGTGGAGGGAGAGAAGAGACCCAGAAGAGGGCTTGGGAGGGACCCAATTTGAGCTTCCCTTTCCTGGGGTGCTGGCACCCTGCCTGACCCACAG
Seq C2 exon
ATCAGCCGGACAACCCAGGTGAGGAGAACTGTGGAGTGATCCGGACTGAGTCCTCAGGCGGCTGGCAGAACCATGACTGCAGCATCGCCCTGCCCTATGTTTGCAAGAAGAAACCCAACGCTACGGTCGAGCCCATCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695:ENSMUST00000100335:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.5=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.6=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTCACGGGCTACA
R:
CTGGATGGGCTCGACCGTAG
Band lengths:
254-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types