GgaINT0144051 @ galGal4
Intron Retention
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2414746-2415535:+
Coord C1 exon
chr27:2414746-2414859
Coord A exon
chr27:2414860-2415391
Coord C2 exon
chr27:2415392-2415535
Length
532 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CCCTTCACCCCCATTTCCAGACC
3' ss Score
8.57
Exon sequences
Seq C1 exon
GGCTGCTGACTGGATACAGCTCCACGCTGTGGATTGGGCTCAATGACCTGGACATCAATGGGGGCTGGCAGTGGTCTGACAACTCGCCACTCAAGTATCTCAACTGGGAGAGCG
Seq A exon
GTGAGCTGGGGGCTGTGTGGGGGGACAGGGTGAGCAGAGGATGTGGCTCCGGGCAGGTGGCAGGAGAGGTGGCCTGGGCTGCCAAGGTGCCCTGAGCTGAGCATCCTTGTTTCAAGGGCTGTTGAATACCAGCGATGGTCAGCACGATGGCCTGGTGTGGAGGACACTGGTGGCATTATTTGCCCACTTCCATCTCTAACCCTTAGCTCACAGGGCAGAAGGACCCGTTGCAGGGGATGCTCCAGTTGTGCCTGGTGCCATCACCCCAAGGCACTCATGGGGATAAATGGAGGTGAACCTTCCCTCCATGGAGGAGGTCTGGGGACAACCACTGATTGCTACCTGGCATTTCTAGTTCATGCTGATGCTCCAGGTCCTTGTGCATCGAGGCACAACAAATAATCCCTAGTGTGCCACAAAATCAATCCATCTCTGCTGGTGTTCGGGCAGGGAGAGCTGTGCCCTGCCAGTCCTGCCCTGTGAGCTCCCAGCAGCATGTCGTCCCCCCCCCCCCCTTCACCCCCATTTCCAG
Seq C2 exon
ACCAGCCCGACAACCCCAGCGAGGAGAACTGTGGTGTGATTCGCACTGAGTCGTCTGGGGGGTGGCAGAACCGTGACTGCGGCATCGCCCTCCCCTACGTCTGCAAGAAGAAACCCAATGCCACCACTGACCCCTTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461:ENSGALT00000000627:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.5=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.6=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGATTGGGCTCAATGA
R:
CTGTCAGGAAGGGGTCAGTGG
Band lengths:
233-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]