BtaINT0095647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51082321-51082656:+
Coord C1 exon
chr22:51082321-51082457
Coord A exon
chr22:51082458-51082539
Coord C2 exon
chr22:51082540-51082656
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TCGGCCCCGTATGTCTCCAGCCA
3' ss Score
4.61
Exon sequences
Seq C1 exon
GTTCACACCCACACTCCGGAACGGCTTGGAGGAGAACTTCTGCCGCAACCCGGACAGGGACCCGGGAGGTCCCTGGTGCTATACAACCGACCCTGCCGTGCGCTTCCAGAGCTGCGGCATAAAGTCCTGCCGAGAGG
Seq A exon
GTAAGCGGCTCCCGGTCAAGCCTGGGGCGGGAGGCGCGTGCCCACGCCCGTCCACGAACCCATCGGCCCCGTATGTCTCCAG
Seq C2 exon
CCACTTGCCTTTGGTGCAATGGCGAGGATTACCGCGGCTCAGTGGACAGCACCGAGTCAGGACGCGAATGTCAACGCTGGGACCTGCAGCACCCGCACCCACACCCCTTCGAGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=91.5)
A:
NA
C2:
PF0005113=Kringle=PU(88.1=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAACTTCTGCCGCAAC
R:
TTGACATTCGCGTCCTGACTC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]