GgaINT0020665 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2480512-2480849:+
Coord C1 exon
chr12:2480512-2480648
Coord A exon
chr12:2480649-2480728
Coord C2 exon
chr12:2480729-2480849
Length
80 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CCTCCCCCGGCCGTTGGCAGCCG
3' ss Score
5.16
Exon sequences
Seq C1 exon
ATTCCTGCCATCCCTCCGCAATGGGCTGGAGGAGAATTACTGCCGCAACCCCGACCGCGACAAGCGGGGCCCGTGGTGCTACACCGTTGACCCCAACGTCCGACACCAGAGCTGCGGCATCAAGAAGTGTGAGGACG
Seq A exon
GTGAGTGCCGTGCTTCGGGGATGCCCTGTGCCGCCCATTCCCATTACCACTGACCCCCCCCCTCCCCCGGCCGTTGGCAG
Seq C2 exon
CCGTCTGCATGACCTGCAATGGGGAGGATTACCGGGGCTTTGTGGACCACACCGAGTCGGGGACCGAGTGCCAGCGCTGGGACCTGCAGCACCCACACAAGCATCCCTACCACCCCGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.171
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=91.5)
A:
NA
C2:
PF0005113=Kringle=PU(48.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAGAATTACTGCCGC
R:
GACTCGGTGTGGTCCACAAAG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]