RnoINT0094905 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859019-116859357:+
Coord C1 exon
chr8:116859019-116859155
Coord A exon
chr8:116859156-116859236
Coord C2 exon
chr8:116859237-116859357
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TGCATTGGCCCTGTTTCCAGCGG
3' ss Score
6.64
Exon sequences
Seq C1 exon
GTACACGCCCACACCGAAGAATGGCCTGGAAGAGAACTTCTGTCGGAACCCTGATGGGGACCCCAGAGGTCCCTGGTGCTACACGACAAACCGCAGCGTGCGTTTCCAGAGCTGCGGCATCAAATCATGCAGGGAGG
Seq A exon
GTAAGCAGCTGGGGTCAATCAAACCTAAGGAGGGAGTAATAGGCCTGCCCCCACCTAGAAATGCATTGGCCCTGTTTCCAG
Seq C2 exon
CGGTTTGTGTTTGGTGCAACGGCGAGGATTACCGTGGCGAGGTAGACGTTACAGAATCGGGACGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCACCCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=91.5)
A:
NA
C2:
PF0005113=Kringle=PU(48.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGAATGGCCTGGAAGAG
R:
TACCTCGCCACGGTAATCCTC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]